Sebastian Kmiecik

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 13

Top Topics

Protein Structure

Tandem Mass Spectra

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

J. Chem. Inf. Model.

Publications

Aleksandra E. Badaczewska-Dawid, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik
Structure prediction of linear and cyclic peptides using CABS-flex. Briefings Bioinform. 25 (2) (2024)
Aleksandra E. Badaczewska-Dawid, Chandran Nithin, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik
MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes. Nucleic Acids Res. 50 (W1) (2022)
Aleksandra E. Badaczewska-Dawid, Javier Garcia-Pardo, Aleksander Kuriata, Jordi Pujols, Salvador Ventura, Sebastian Kmiecik
A3D database: structure-based predictions of protein aggregation for the human proteome. Bioinform. 38 (11) (2022)
Aleksandra E. Badaczewska-Dawid, Sebastian Kmiecik, Michal Kolinski
Docking of peptides to GPCRs using a combination of CABS-dock with FlexPepDock refinement. Briefings Bioinform. 22 (3) (2021)
Maciej Blaszczyk, Maciej Pawel Ciemny, Andrzej Kolinski, Mateusz Kurcinski, Sebastian Kmiecik
Protein-peptide docking using CABS-dock and contact information. Briefings Bioinform. 20 (6) (2019)
Mateusz Kurcinski, Tymoteusz Oleniecki, Maciej Pawel Ciemny, Aleksander Kuriata, Andrzej Kolinski, Sebastian Kmiecik
CABS-flex standalone: a simulation environment for fast modeling of protein flexibility. Bioinform. 35 (4) (2019)
Aleksander Kuriata, Valentin Iglesias, Mateusz Kurcinski, Salvador Ventura, Sebastian Kmiecik
Aggrescan3D standalone package for structure-based prediction of protein aggregation properties. Bioinform. 35 (19) (2019)
Mateusz Kurcinski, Maciej Pawel Ciemny, Tymoteusz Oleniecki, Aleksander Kuriata, Aleksandra E. Badaczewska-Dawid, Andrzej Kolinski, Sebastian Kmiecik
CABS-dock standalone: a toolbox for flexible protein-peptide docking. Bioinform. 35 (20) (2019)
Aleksander Kuriata, Valentin Iglesias, Jordi Pujols, Mateusz Kurcinski, Sebastian Kmiecik, Salvador Ventura
Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Aleksander Kuriata, Aleksandra Maria Gierut, Tymoteusz Oleniecki, Maciej Pawel Ciemny, Andrzej Kolinski, Mateusz Kurcinski, Sebastian Kmiecik
CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Wojciech Pulawski, Michal Jamróz, Michal Kolinski, Andrzej Kolinski, Sebastian Kmiecik
Coarse-Grained Simulations of Membrane Insertion and Folding of Small Helical Proteins Using the CABS Model. J. Chem. Inf. Model. 56 (11) (2016)
Rafael Zambrano, Michal Jamróz, Agata Szczasiuk, Jordi Pujols, Sebastian Kmiecik, Salvador Ventura
AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Mateusz Kurcinski, Michal Jamróz, Maciej Blaszczyk, Andrzej Kolinski, Sebastian Kmiecik
CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Michal Jamróz, Andrzej Kolinski, Sebastian Kmiecik
CABS-flex predictions of protein flexibility compared with NMR ensembles. Bioinform. 30 (15) (2014)
Michal Jamróz, Andrzej Kolinski, Sebastian Kmiecik
CABS-flex: server for fast simulation of protein structure fluctuations. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Maciej Blaszczyk, Michal Jamróz, Sebastian Kmiecik, Andrzej Kolinski
and consensus-based prediction of protein structure. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Dominik Gront, Sebastian Kmiecik, Andrzej Kolinski
Backbone building from quadrilaterals: A fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates. J. Comput. Chem. 28 (9) (2007)