Ruibo Wu

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 10

Top Topics

Space Exploration

Molecular Dynamics

Web Development

Top Venues

J. Chem. Inf. Model.

Briefings Bioinform.

Publications

Nianhang Chen, Rong Zhang, Tao Zeng, Xuting Zhang, Ruibo Wu
Developing TeroENZ and TeroMAP modules for the terpenome research platform TeroKit. Database J. Biol. Databases Curation 2023 (2023)
Fan Zhang, Tao Zeng, Ruibo Wu
QM/MM Modeling Aided Enzyme Engineering in Natural Products Biosynthesis. J. Chem. Inf. Model. 63 (16) (2023)
Tao Zeng, Bernard Andes Hess Jr., Fan Zhang, Ruibo Wu
Bio-inspired chemical space exploration of terpenoids. Briefings Bioinform. 23 (5) (2022)
Shuangjia Zheng, Tao Zeng, Chengtao Li, Binghong Chen, Connor W. Coley, Yuedong Yang, Ruibo Wu
BioNavi-NP: Biosynthesis Navigator for Natural Products. CoRR (2021)
Jingyuan Zhuang, Fan Zhang, Jingwei Zhou, Wenbin Deng, Ruibo Wu
Residue-Orientation-Dependent Dynamics and Selectivity of Active Pocket in Microbe Class I Terpene Cyclases. J. Chem. Inf. Model. 60 (10) (2020)
Tao Zeng, Zhihong Liu, Jingyuan Zhuang, Yitao Jiang, Wengan He, Hongjuan Diao, Nan Lv, Yongxing Jian, Danhong Liang, Yufan Qiu, Rong Zhang, Fan Zhang, Xiaowen Tang, Ruibo Wu
TeroKit: A Database-Driven Web Server for Terpenome Research. J. Chem. Inf. Model. 60 (4) (2020)
Kai Wang, Nan Lyu, Hongjuan Diao, Shujuan Jin, Tao Zeng, Yaoqi Zhou, Ruibo Wu
GM-DockZn: a geometry matching-based docking algorithm for zinc proteins. Bioinform. 36 (13) (2020)
Tao Zeng, Zhihong Liu, Huawei Liu, Wengan He, Xiaowen Tang, Liwei Xie, Ruibo Wu
Exploring Chemical and Biological Space of Terpenoids. J. Chem. Inf. Model. 59 (9) (2019)
Jingwei Zhou, Yue Huang, Chunyan Cheng, Kai Wang, Ruibo Wu
Intrinsic Dynamics of the Binding Rail and Its Allosteric Effect in the Class I Histone Deacetylases. J. Chem. Inf. Model. 57 (9) (2017)
Fan Zhang, Nanhao Chen, Ruibo Wu
Molecular Dynamics Simulations Elucidate Conformational Dynamics Responsible for the Cyclization Reaction in TEAS. J. Chem. Inf. Model. 56 (5) (2016)
Ming Kuang, Jingwei Zhou, Laiyou Wang, Zhihong Liu, Jiao Guo, Ruibo Wu
Binding Kinetics versus Affinities in BRD4 Inhibition. J. Chem. Inf. Model. 55 (9) (2015)
Wenjing Gong, Ruibo Wu, Yingkai Zhang
QM/MM molecular dynamics study. J. Comput. Chem. 36 (30) (2015)
Jingwei Zhou, Hujun Xie, Zhihong Liu, Hai-Bin Luo, Ruibo Wu
Structure-Function Analysis of the Conserved Tyrosine and Diverse π-Stacking among Class I Histone Deacetylases: A QM (DFT)/MM MD Study. J. Chem. Inf. Model. 54 (11) (2014)
Hu Ge, Yu Wang, Chanjuan Li, Nanhao Chen, Yufang Xie, Mengyan Xu, Yingyan He, Xinchun Gu, Ruibo Wu, Qiong Gu, Liang Zeng, Jun Xu
Molecular Dynamics-Based Virtual Screening: Accelerating the Drug Discovery Process by High-Performance Computing. J. Chem. Inf. Model. 53 (10) (2013)
Xin Zhang, Ruibo Wu, Lingchun Song, Yuchun Lin, Menghai Lin, Zexing Cao, Wei Wu, Yirong Mo
Molecular dynamics simulations of the detoxification of paraoxon catalyzed by phosphotriesterase. J. Comput. Chem. 30 (15) (2009)
Ruibo Wu, Zexing Cao
-glutamine SAM-dependent methyltransferase and its inhibition by the nitrogen analogue of coenzyme. J. Comput. Chem. 29 (3) (2008)
Hujun Xie, Ruibo Wu, Fei Xia, Zexing Cao
bond cleavages of pyrimidine nucleotides: A theoretical study. J. Comput. Chem. 29 (12) (2008)