Rosemary Braun

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 6

Top Topics

Drosophila Melanogaster

Population Size

Regulatory Elements

Gene Expression

Top Venues

PLoS Comput. Biol.

Publications

Connor Puritz, Elan Ness-Cohn, Rosemary Braun
fasano.franceschini.test: An Implementation of a Multivariate KS Test in R. R J. 15 (3) (2023)
Elan Ness-Cohn, Rosemary Braun
TimeCycle: topology inspired method for the detection of cycling transcripts in circadian time-series data. Bioinform. 37 (23) (2021)
Tomasz Wojdyla, Hrishikesh Mehta, Taly Glaubach, Roberto Bertolusso, Marta Iwanaszko, Rosemary Braun, Seth J. Corey, Marek Kimmel
Mutation, drift and selection in single-driver hematologic malignancy: Example of secondary myelodysplastic syndrome following treatment of inherited neutropenia. PLoS Comput. Biol. 15 (1) (2019)
Sahil D. Shah, Rosemary Braun
GeneSurrounder: network-based identification of disease genes in expression data. BMC Bioinform. 20 (1) (2019)
Phan Nguyen, Rosemary Braun
Time-lagged Ordered Lasso for network inference. BMC Bioinform. 19 (1) (2018)
Phan Nguyen, Rosemary Braun
Semi-supervised network inference using simulated gene expression dynamics. Bioinform. 34 (7) (2018)
Rosemary Braun, Gregory Leibon, Scott D. Pauls, Daniel N. Rockmore
Partition decoupling for multi-gene analysis of gene expression profiling data. BMC Bioinform. 12 (2011)
Rosemary Braun, Leslie Cope, Giovanni Parmigiani
Identifying differential correlation in gene/pathway combinations. BMC Bioinform. 9 (2008)
James C. Phillips, Rosemary Braun, Wei Wang, James C. Gumbart, Emad Tajkhorshid, Elizabeth Villa, Christophe Chipot, Robert D. Skeel, Laxmikant V. Kalé, Klaus Schulten
Scalable molecular dynamics with NAMD. J. Comput. Chem. 26 (16) (2005)