Roman G. Efremov

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 4

Top Topics

Insertions And Deletions

Structural Analysis

Top Venues

J. Chem. Inf. Model.

Nat. Comput. Sci.

Publications

Vadim K. Karnaukhov, Dmitrii S. Shcherbinin, Anton O. Chugunov, Dmitriy M. Chudakov, Roman G. Efremov, Ivan V. Zvyagin, Mikhail Shugay
Structure-based prediction of T cell receptor recognition of unseen epitopes using TCRen. Nat. Comput. Sci. 4 (7) (2024)
Anastasia G. Konshina, Peter V. Dubovskii, Roman G. Efremov
Stepwise Insertion of Cobra Cardiotoxin CT2 into a Lipid Bilayer Occurs as an Interplay of Protein and Membrane "Dynamic Molecular Portraits". J. Chem. Inf. Model. 61 (1) (2021)
Roman G. Efremov
Dielectric-Dependent Strength of Interlipid Hydrogen Bonding in Biomembranes: Model Case Study. J. Chem. Inf. Model. 59 (6) (2019)
Anastasia G. Konshina, Nikolay A. Krylov, Roman G. Efremov
Cardiotoxins: Functional Role of Local Conformational Changes. J. Chem. Inf. Model. 57 (11) (2017)
Anton A. Polyansky, Anton O. Chugunov, Pavel E. Volynsky, Nikolay A. Krylov, Dmitry E. Nolde, Roman G. Efremov
PREDDIMER: a web server for prediction of transmembrane helical dimers. Bioinform. 30 (6) (2014)
Anna D. Koromyslova, Anton O. Chugunov, Roman G. Efremov
Method. J. Chem. Inf. Model. 54 (4) (2014)
Timothy V. Pyrkov, Anton O. Chugunov, Nikolay A. Krylov, Dmitry E. Nolde, Roman G. Efremov
PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes. Bioinform. 25 (9) (2009)
Anton O. Chugunov, Valery N. Novoseletsky, Dmitry E. Nolde, Alexander S. Arseniev, Roman G. Efremov
Method To Assess Packing Quality of Transmembrane α-Helices in Proteins, 1. Parametrization Using Structural Data. J. Chem. Inf. Model. 47 (3) (2007)
Timothy V. Pyrkov, Yuri A. Kosinsky, Alexander S. Arseniev, John P. Priestle, Edgar Jacoby, Roman G. Efremov
Docking of ATP to Ca-ATPase: Considering Protein Domain Motions. J. Chem. Inf. Model. 47 (3) (2007)
Anton A. Polyansky, Pavel E. Volynsky, Roman G. Efremov
Computer Simulations of Membrane-Lytic peptides: Perspectives in Drug Design. J. Bioinform. Comput. Biol. 5 (2b) (2007)
Anton O. Chugunov, Valery N. Novoseletsky, Dmitry E. Nolde, Alexander S. Arseniev, Roman G. Efremov
Method To Assess Packing Quality of Transmembrane α-Helices in Proteins, 2. Validation by "Correct vs Misleading" Test. J. Chem. Inf. Model. 47 (3) (2007)
Roman G. Efremov, Yana A. Vereshaga, Pavel E. Volynsky, Dmitry E. Nolde, Alexander S. Arseniev
Association of transmembrane helices: what determines assembling of a dimer? J. Comput. Aided Mol. Des. 20 (1) (2006)
Yuri A. Kosinsky, Pavel E. Volynsky, Philippe Lagant, Gérard Vergoten, Ei-Ichiro Suzuki, Alexander S. Arseniev, Roman G. Efremov
Development of the force field parameters for phosphoimidazole and phosphohistidine. J. Comput. Chem. 25 (11) (2004)