Rhiju Das

Publication Activity (10 Years)

Years Active: 2007-2022
Publications (10 Years): 7

Top Topics

Rna Secondary Structure Prediction

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Hannah K. Wayment-Steele, Wipapat Kladwang, Andrew M. Watkins, Do Soon Kim, Bojan Tunguz, Walter Reade, Maggie Demkin, Jonathan Romano, Roger Wellington-Oguri, John J. Nicol, Jiayang Gao, Kazuki Onodera, Kazuki Fujikawa, Hanfei Mao, Gilles Vandewiele, Michele Tinti, Bram Steenwinckel, Takuya Ito, Taiga Noumi, Shujun He, Keiichiro Ishi, Youhan Lee, Fatih Öztürk, King Yuen Chiu, Emin Öztürk, Karim Amer, Mohamed Fares, Rhiju Das
Deep learning models for predicting RNA degradation via dual crowdsourcing. Nat. Mac. Intell. 4 (12) (2022)
Hannah K. Wayment-Steele, Wipapat Kladwang, Andrew M. Watkins, Do Soon Kim, Bojan Tunguz, Walter Reade, Maggie Demkin, Jonathan Romano, Roger Wellington-Oguri, John J. Nicol, Jiayang Gao, Kazuki Onodera, Kazuki Fujikawa, Hanfei Mao, Gilles Vandewiele, Michele Tinti, Bram Steenwinckel, Takuya Ito, Taiga Noumi, Shujun He, Keiichiro Ishi, Youhan Lee, Fatih Öztürk, Anthony Chiu, Emin Öztürk, Karim Amer, Mohamed Fares, Eterna Participants, Rhiju Das
Predictive models of RNA degradation through dual crowdsourcing. CoRR (2021)
Marcin Magnus, Kalli Kappel, Rhiju Das, Janusz M. Bujnicki
RNA 3D structure prediction guided by independent folding of homologous sequences. BMC Bioinform. 20 (1) (2019)
Rohan V. Koodli, Benjamin Keep, Katherine R. Coppess, Fernando Portela, Rhiju Das
EternaBrain: Automated RNA design through move sets and strategies from an Internet-scale RNA videogame. PLoS Comput. Biol. 15 (6) (2019)
Jade Shi, Rhiju Das, Vijay S. Pande
SentRNA: Improving computational RNA design by incorporating a prior of human design strategies. CoRR (2018)
Joseph D. Yesselman, Siqi Tian, Xin Liu, Lei Shi, Jin Billy Li, Rhiju Das
Updates to the RNA mapping database (RMDB), version 2. Nucleic Acids Res. 46 (Database-Issue) (2018)
Siqi Tian, Rhiju Das
Primerize-2D: automated primer design for RNA multidimensional chemical mapping. Bioinform. 33 (9) (2017)
Seungmyung Lee, Hanjoo Kim, Siqi Tian, Taehoon Lee, Sungroh Yoon, Rhiju Das
Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles. Bioinform. 31 (17) (2015)
Siqi Tian, Joseph D. Yesselman, Pablo Cordero, Rhiju Das
Primerize: automated primer assembly for transcribing non-coding RNA domains. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Joseph D. Yesselman, Rhiju Das
RNA-Redesign: a web server for fixed-backbone 3D design of RNA. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Pablo Cordero, Rhiju Das
Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis. PLoS Comput. Biol. 11 (11) (2015)
Fang-Chieh Chou, Jan Lipfert, Rhiju Das
Blind Predictions of DNA and RNA Tweezers Experiments with Force and Torque. PLoS Comput. Biol. 10 (8) (2014)
Hanjoo Kim, Pablo Cordero, Rhiju Das, Sungroh Yoon
HiTRACE-Web: an online tool for robust analysis of high-throughput capillary electrophoresis. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Pablo Cordero, Julius B. Lucks, Rhiju Das
An RNA Mapping DataBase for curating RNA structure mapping experiments. Bioinform. 28 (22) (2012)
Sungroh Yoon, Jinkyu Kim, Justine Hum, Hanjoo Kim, Seunghyun Park, Wipapat Kladwang, Rhiju Das
HiTRACE: high-throughput robust analysis for capillary electrophoresis. Bioinform. 27 (13) (2011)
Pablo Cordero, Julius B. Lucks, Rhiju Das
The Stanford RNA Mapping Database for sharing and visualizing RNA structure mapping experiments CoRR (2011)
Jinkyu Kim, Seunghak Yu, Byonghyo Shim, Hanjoo Kim, Hyeyoung Min, Eui-Young Chung, Rhiju Das, Sungroh Yoon
A robust peak detection method for RNA structure inference by high-throughput contact mapping. Bioinform. 25 (9) (2009)
Ben Blum, Michael I. Jordan, David Kim, Rhiju Das, Philip Bradley, David Baker
Feature Selection Methods for Improving Protein Structure Prediction with Rosetta. NIPS (2007)