Rafael Silva-Rocha

Publication Activity (10 Years)

Years Active: 2011-2022
Publications (10 Years): 1

Top Topics

Software Architecture

Metabolic Pathways

Escherichia Coli

Interactive Visualization

Top Venues

Nucleic Acids Res.

Publications

Gustavo Tamasco, Manish Kumar, Karsten Zengler, Rafael Silva-Rocha, Ricardo Roberto da Silva
ChiMera: an easy to use pipeline for bacterial genome based metabolic network reconstruction, evaluation and visualization. BMC Bioinform. 23 (1) (2022)
Rafael Silva-Rocha, Esteban Martínez-García, Belén Calles, Max Chavarría, Alejandro Arce-Rodríguez, Aitor de las Heras, A. David Páez-Espino, Gonzalo Durante-Rodríguez, Juhyun Kim, Pablo I. Nikel, Raúl Platero, Victor de Lorenzo
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes. Nucleic Acids Res. 41 (Database-Issue) (2013)
Rafael Silva-Rocha, Victor de Lorenzo
Bacteria as Computers: Formalizing Transcriptional Regulatory Networks by Way of Digital Logic Circuits. Int. J. Unconv. Comput. 8 (5-6) (2012)
Rafael Silva-Rocha, Hidde de Jong, Javier Tamames, Víctor de Lorenzo
The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene. BMC Syst. Biol. 5 (2011)