Peter Virnau

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 4

Top Topics

Monte Carlo Methods

Molecular Dynamics

Top Venues

Comput. Phys. Commun.

Proc. Natl. Acad. Sci. USA

Nucleic Acids Res.

Frontiers Bioinform.

Publications

Jan Rothörl, Maarten A. Brems, Tim J. Stevens, Peter Virnau
Reconstructing diploid 3D chromatin structures from single cell Hi-C data with a polymer-based approach. Frontiers Bioinform. 3 (2023)
Joanna I. Sulkowska, Szymon Niewieczerzal, Aleksandra I. Jarmolinska, Jonathan T. Siebert, Peter Virnau, Wanda Niemyska
KnotGenome: a server to analyze entanglements of chromosomes. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
S. Stalter, Leonid Yelash, N. Emamy, Antonia Statt, Martin Hanke, Mária Lukácová-Medvid'ová, Peter Virnau
Molecular dynamics simulations in hybrid particle-continuum schemes: Pitfalls and caveats. Comput. Phys. Commun. 224 (2018)
Florian C. Rieger, Peter Virnau
A Monte Carlo Study of Knots in Long Double-Stranded DNA Chains. PLoS Comput. Biol. 12 (9) (2016)
Benjamin Trefz, Jonathan T. Siebert, Peter Virnau
How molecular knots can pass through each other. Proc. Natl. Acad. Sci. USA 111 (22) (2014)
Daniel Reith, Peter Virnau
Monte Carlo simulations of a single polystyrene chain in spherical confinement. Comput. Phys. Commun. 182 (9) (2011)
D. Wilms, Anke Winkler, Peter Virnau, Kurt Binder
Monte Carlo simulations of the 2d-Ising model in the geometry of a long stripe. Comput. Phys. Commun. 182 (9) (2011)
Daniel Bölinger, Joanna I. Sulkowska, Hsiao-Ping Hsu, Leonid A. Mirny, Mehran Kardar, José N. Onuchic, Peter Virnau
A Stevedore's Protein Knot. PLoS Comput. Biol. 6 (4) (2010)
Benjamin Block, Peter Virnau, Tobias Preis
Multi-GPU accelerated multi-spin Monte Carlo simulations of the 2D Ising model. Comput. Phys. Commun. 181 (9) (2010)
Daniel Reith, Peter Virnau
Implementation and performance analysis of bridging Monte Carlo moves for off-lattice single chain polymers in globular states. Comput. Phys. Commun. 181 (4) (2010)
Benjamin Block, Peter Virnau, Tobias Preis
Multi-GPU Accelerated Multi-Spin Monte Carlo Simulations of the 2D Ising Model CoRR (2010)
Tobias Preis, Peter Virnau, Wolfgang Paul, Johannes J. Schneider
GPU accelerated Monte Carlo simulation of the 2D and 3D Ising model. J. Comput. Phys. 228 (12) (2009)
Grigory Kolesov, Peter Virnau, Mehran Kardar, Leonid A. Mirny
Protein knot server: detection of knots in protein structures. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Peter Virnau, Leonid A. Mirny, Mehran Kardar
Intricate Knots in Proteins: Function and Evolution. PLoS Comput. Biol. 2 (9) (2006)