Pemra Doruker

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 4

Top Topics

Protein Protein Interaction Networks

Dynamical Systems

Protein Structure

Top Venues

J. Chem. Inf. Model.

Publications

Ambuj Kumar, Burak T. Kaynak, Karin S. Dorman, Pemra Doruker, Robert L. Jernigan
Predicting allosteric pockets in protein biological assemblages. Bioinform. 39 (5) (2023)
Burak T. Kaynak, She Zhang, Ivet Bahar, Pemra Doruker
ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution. Bioinform. 37 (21) (2021)
She Zhang, James Krieger, Yan Zhang, Cihan Kaya, Burak T. Kaynak, Karolina Mikulska-Ruminska, Pemra Doruker, Hongchun Li, Ivet Bahar
ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python. Bioinform. 37 (20) (2021)
Burak T. Kaynak, Pemra Doruker
Protein-Ligand Complexes as Constrained Dynamical Systems. J. Chem. Inf. Model. 59 (5) (2019)
Zeynep Kurkcuoglu, Pemra Doruker
Substrate Effect on Catalytic Loop and Global Dynamics of Triosephosphate Isomerase. Entropy 15 (3) (2013)
Zeynep Kurkcuoglu, Ahmet Bakan, Duygu Kocaman, Ivet Bahar, Pemra Doruker
Coupling between Catalytic Loop Motions and Enzyme Global Dynamics. PLoS Comput. Biol. 8 (9) (2012)
Burak Alakent, Sena Baskan, Pemra Doruker
Effect of ligand binding on the intraminimum dynamics of proteins. J. Comput. Chem. 32 (3) (2011)
Burak Alakent, Mehmet C. Camurdan, Pemra Doruker
Mimicking Protein Dynamics by the Integration of Elastic Network Model with Time Series Analysis. Int. J. High Perform. Comput. Appl. 21 (1) (2007)
Pemra Doruker, Robert L. Jernigan, Ivet Bahar
Dynamics of large proteins through hierarchical levels of coarse-grained structures. J. Comput. Chem. 23 (1) (2002)