Patrick R. Johnstone

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 20

Top Topics

Global Convergence

Ionizing Radiation

Molecular Interactions

Density Estimation

Top Venues

Comput. Optim. Appl.

Publications

Xihaier Luo, Seyednami Niyakan, Patrick R. Johnstone, Sean McCorkle, Gilchan Park, Vanessa López-Marrero, Shinjae Yoo, Edward R. Dougherty, Xiaoning Qian, Francis J. Alexander, Shantenu Jha, Byung-Jun Yoon
Pathway-based analyses of gene expression profiles at low doses of ionizing radiation. Frontiers Bioinform. 4 (2024)
Patrick R. Johnstone, Jonathan Eckstein, Thomas Flynn, Shinjae Yoo
Correction to: Stochastic projective splitting. Comput. Optim. Appl. 87 (2) (2024)
Patrick R. Johnstone, Jonathan Eckstein, Thomas Flynn, Shinjae Yoo
Stochastic projective splitting. Comput. Optim. Appl. 87 (2) (2024)
Vanessa López-Marrero, Patrick R. Johnstone, Gilchan Park, Xihaier Luo
Density Estimation via Measure Transport: Outlook for Applications in the Biological Sciences. CoRR (2023)
Gilchan Park, Byung-Jun Yoon, Xihaier Luo, Vanessa López-Marrero, Patrick R. Johnstone, Shinjae Yoo, Francis J. Alexander
Comparative Performance Evaluation of Large Language Models for Extracting Molecular Interactions and Pathway Knowledge. CoRR (2023)
Gilchan Park, Byung-Jun Yoon, Xihaier Luo, Vanessa López-Marrero, Patrick R. Johnstone, Shinjae Yoo, Francis J. Alexander
Automated Extraction of Molecular Interactions and Pathway Knowledge using Large Language Model, Galactica: Opportunities and Challenges. BioNLP@ACL (2023)
Patrick R. Johnstone, Jonathan Eckstein
Projective splitting with forward steps. Math. Program. 191 (2) (2022)
Patrick R. Johnstone, Jonathan Eckstein, Thomas Flynn, Shinjae Yoo
Stochastic Projective Splitting: Solving Saddle-Point Problems with Multiple Regularizers. CoRR (2021)
Patrick R. Johnstone, Jonathan Eckstein
Single-forward-step projective splitting: exploiting cocoercivity. Comput. Optim. Appl. 78 (1) (2021)
Patrick R. Johnstone, Pierre Moulin
Faster subgradient methods for functions with Hölderian growth. Math. Program. 180 (1) (2020)
Patrick R. Johnstone, Jonathan Eckstein
Projective splitting with forward steps only requires continuity. Optim. Lett. 14 (1) (2020)
Patrick R. Johnstone, Jonathan Eckstein
Convergence Rates for Projective Splitting. SIAM J. Optim. 29 (3) (2019)
Patrick R. Johnstone, Jonathan Eckstein
Single-Forward-Step Projective Splitting: Exploiting Cocoercivity. CoRR (2019)
Patrick R. Johnstone, Jonathan Eckstein
Projective Splitting with Forward Steps: Asynchronous and Block-Iterative Operator Splitting. CoRR (2018)
Patrick R. Johnstone, Jonathan Eckstein
Projective Splitting with Forward Steps only Requires Continuity. CoRR (2018)
Patrick R. Johnstone, Jonathan Eckstein
Convergence Rates for Projective Splitting. CoRR (2018)
Patrick R. Johnstone, Pierre Moulin
Local and global convergence of a general inertial proximal splitting scheme for minimizing composite functions. Comput. Optim. Appl. 67 (2) (2017)
Patrick R. Johnstone, Pierre Moulin
Convergence rates of inertial splitting schemes for nonconvex composite optimization. ICASSP (2017)
Patrick R. Johnstone, Pierre Moulin
Faster Subgradient Methods for Functions with Hölderian Growth. CoRR (2017)
Patrick R. Johnstone, Pierre Moulin
Local and Global Convergence of a General Inertial Proximal Splitting Scheme. CoRR (2016)
Patrick R. Johnstone, Pierre Moulin
A Lyapunov Analysis of FISTA with Local Linear Convergence for Sparse Optimization. CoRR (2015)
Pierre Moulin, Patrick R. Johnstone
Strong large deviations for Rao test score and GLRT in exponential families. ISIT (2015)
Patrick R. Johnstone, Pierre Moulin
Convergence of an inertial proximal method for l1-regularized least-squares. ICASSP (2015)