Nicholas A. Bokulich

Publication Activity (10 Years)

Years Active: 2018-2022
Publications (10 Years): 5

Top Topics

Database Integration

Representative Samples

Individual Classifiers

Top Venues

PLoS Comput. Biol.

J. Open Source Softw.

Publications

Nicholas A. Bokulich, Pawel Laniewski, Anja Adamov, Dana M. Chase, J. Gregory Caporaso, Melissa M. Herbst-Kralovetz
Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment. PLoS Comput. Biol. 18 (2) (2022)
Michal Ziemski, Anja Adamov, Lina Kim, Lena Flörl, Nicholas A. Bokulich
Reproducible acquisition, management and meta-analysis of nucleotide sequence (meta)data using q2-fondue. Bioinform. 38 (22) (2022)
Matthew R. Dillon, Evan Bolyen, Anja Adamov, Aeriel Belk, Emily Borsom, Zachary Burcham, Justine W. Debelius, Heather Deel, Alex Emmons, Mehrbod Estaki, Chloe Herman, Christopher R. Keefe, Jamie T. Morton, Renato R. M. Oliveira, Andrew Sanchez, Anthony Simard, Yoshiki Vazquez-Baeza, Michal Ziemski, Hazuki E. Miwa, Terry A. Kerere, Carline Coote, Richard Bonneau, Rob Knight, Guilherme Oliveira, Piraveen Gopalasingam, Benjamin D. Kaehler, Emily K. Cope, Jessica L. Metcalf, Michael S. Robeson II, Nicholas A. Bokulich, J. Gregory Caporaso
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. PLoS Comput. Biol. 17 (6) (2021)
Michael S. Robeson II, Devon R. O'Rourke, Benjamin D. Kaehler, Michal Ziemski, Matthew R. Dillon, Jeffrey T. Foster, Nicholas A. Bokulich
RESCRIPt: Reproducible sequence taxonomy reference database management. PLoS Comput. Biol. 17 (11) (2021)
Nicholas A. Bokulich, Matthew R. Dillon, Evan Bolyen, Benjamin D. Kaehler, Gavin A. Huttley, J. Gregory Caporaso
q2-sample-classifier: machine-learning tools for microbiome classification and regression. J. Open Source Softw. 3 (30) (2018)