Markus Axer

Publication Activity (10 Years)

Years Active: 2001-2024
Publications (10 Years): 28

Top Topics

High Resolution

Seeded Region Growing

Top Venues

Bildverarbeitung für die Medizin

Publications

Alexander Oberstraß, Sascha E. A. Muenzing, Meiqi Niu, Nicola Palomero-Gallagher, Christian Schiffer, Markus Axer, Katrin Amunts, Timo Dickscheid
Self-Supervised Representation Learning for Nerve Fiber Distribution Patterns in 3D-PLI. CoRR (2024)
Alexander Oberstraß, Jordan DeKraker, Nicola Palomero-Gallagher, Sascha E. A. Muenzing, Alan C. Evans, Markus Axer, Katrin Amunts, Timo Dickscheid
Analyzing Regional Organization of the Human Hippocampus in 3D-PLI Using Contrastive Learning and Geometric Unfolding. CoRR (2024)
Esteban Vaca, Miriam Menzel, Katrin Amunts, Markus Axer, Timo Dickscheid
GORDA: Graph-Based Orientation Distribution Analysis of SLI Scatterometry Patterns of Nerve Fibres. ISBI (2022)
Anastasia Yendiki, Manisha Aggarwal, Markus Axer, Amy F. D. Howard, Anne-Marie van Cappellen van Walsum, Suzanne N. Haber
Post mortem mapping of connectional anatomy for the validation of diffusion MRI. NeuroImage 256 (2022)
Esteban Vaca, Miriam Menzel, Katrin Amunts, Markus Axer, Timo Dickscheid
GORDA: Graph-based ORientation Distribution Analysis of SLI scatterometry Patterns of Nerve Fibres. CoRR (2022)
Felix Matuschke, Katrin Amunts, Markus Axer
fastPLI: A Fiber Architecture Simulation Toolbox for 3D-PLI. J. Open Source Softw. 6 (61) (2021)
Miriam Menzel, Jan André Reuter, David Gräßel, Mike Huwer, Philipp Schlömer, Katrin Amunts, Markus Axer
Scattered Light Imaging: Resolving the substructure of nerve fiber crossings in whole brain sections with micrometer resolution. NeuroImage 233 (2021)
Abib Alimi, Samuel Deslauriers-Gauthier, Felix Matuschke, Andreas Müller, Sascha E. A. Muenzing, Markus Axer, Rachid Deriche
Analytical and fast Fiber Orientation Distribution reconstruction in 3D-Polarized Light Imaging. Medical Image Anal. 65 (2020)
Marius Nolden, Nicole Schubert, Daniel Schmitz, Andreas Müller, Markus Axer
Tracing of Nerve Fibers Through Brain Regions of Fiber Crossings in Reconstructed 3D-PLI Volumes. Bildverarbeitung für die Medizin (2019)
Kai Benning, Miriam Menzel, Jan André Reuter, Markus Axer
Independent Component Analysis for Noise and Artifact Removal in Three-Dimensional Polarized Light Imaging. BrainComp (2019)
Jan André Reuter, Felix Matuschke, Miriam Menzel, Nicole Schubert, Kévin Ginsburger, Cyril Poupon, Katrin Amunts, Markus Axer
FAConstructor: an interactive tool for geometric modeling of nerve fiber architectures in the brain. Int. J. Comput. Assist. Radiol. Surg. 14 (11) (2019)
Jan André Reuter, Felix Matuschke, Nicole Schubert, Markus Axer
Efficient Construction of Geometric Nerve Fiber Models for Simulation with 3D-PLI. Bildverarbeitung für die Medizin (2019)
Ali C. Demiralp, Daniel Zielasko, Markus Axer, Tom Vierjahn, Torsten W. Kuhlen
Parallel Particle Advection and Lagrangian Analysis for 3D-PLI Fiber Orientation Maps. LDAV (2019)
Abib Alimi, Samuel Deslauriers-Gauthier, Felix Matuschke, Daniel Schmitz, Markus Axer, Rachid Deriche
Analytical Fiber ODF Reconstruction in 3D Polarized Light Imaging: Performance Assessment. ISBI (2019)
Kévin Ginsburger, Felix Matuschke, Fabrice Poupon, Jean-François Mangin, Markus Axer, Cyril Poupon
MEDUSA: A GPU-based tool to create realistic phantoms of the brain microstructure using tiny spheres. NeuroImage 193 (2019)
Sharib Ali, Katrin Amunts, Roland Eils, Markus Axer, Karl Rohr
Scale-bundle spline-based non-rigid registration for handling fissures. ISBI (2018)
Sharib Ali, Martin Schober, Philipp Schlömer, Katrin Amunts, Markus Axer, Karl Rohr
Towards ultra-high resolution 3D reconstruction of a whole rat brain from 3D-PLI data. CoRR (2018)
Daniel Schmitz, Katrin Amunts, Thomas Lippert, Markus Axer
A least squares approach for the reconstruction of nerve fiber orientations from tiltable specimen experiments in 3D-PLI. ISBI (2018)
Sharib Ali, Dehui Lin, Markus Axer, Karl Rohr
Comparison of Self-similarity Measures for Multi-modal Non-rigid Registration of 3D-PLI Brain Images. Bildverarbeitung für die Medizin (2018)
Sharib Ali, Markus Axer, Katrin Amunts, Roland Eils, Karl Rohr
Evaluating local features in high-resolution 3D-PLI data. ISBI (2018)
Sharib Ali, Martin Schober, Philipp Schlömer, Katrin Amunts, Markus Axer, Karl Rohr
Towards Ultra-High Resolution 3D Reconstruction of a Whole Rat Brain from 3D-PLI Data. CNI@MICCAI (2018)
Sharib Ali, Stefan Wörz, Katrin Amunts, Roland Eils, Markus Axer, Karl Rohr
Rigid and non-rigid registration of polarized light imaging data for 3D reconstruction of the temporal lobe of the human brain at micrometer resolution. NeuroImage 181 (2018)
Sharib Ali, Karl Rohr, Markus Axer, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Stefan Wörz
Elastic registration of high-resolution 3D PLI data of the human brain. ISBI (2017)
Sharib Ali, Karl Rohr, Markus Axer, Katrin Amunts, Roland Eils, Stefan Wörz
Registration of ultra-high resolution 3D PLI data of human brain sections to their corresponding high-resolution counterpart. ISBI (2017)
Sharib Ali, Karl Rohr, David Gräßel, Philipp Schlömer, Katrin Amunts, Roland Eils, Markus Axer, Stefan Wörz
Spline-Based Multimodal Image Registration of 3D PLI Data of the Human Brain. Bildverarbeitung für die Medizin (2017)
Claudia Hänel, Ali C. Demiralp, Markus Axer, David Gräßel, Bernd Hentschel, Torsten W. Kuhlen
Interactive Level-of-Detail Visualization of 3D-Polarized Light Imaging Data Using Spherical Harmonics. EuroVis (Short Papers) (2017)
Martin Schober, Markus Axer, Marcel Huysegoms, Nicole Schubert, Katrin Amunts, Timo Dickscheid
Morphing Image Masks for Stacked Histological Sections Using Laplace's Equation. Bildverarbeitung für die Medizin (2016)
Nicole Schubert, David Gräßel, Uwe Pietrzyk, Katrin Amunts, Markus Axer
Visualization of Vector Fields Derived from 3D Polarized Light Imaging. Bildverarbeitung für die Medizin (2016)
Melanie Dohmen, Miriam Menzel, Hendrik Wiese, Julia Reckfort, Frederike Hanke, Uwe Pietrzyk, Karl Zilles, Katrin Amunts, Markus Axer
Understanding fiber mixture by simulation in 3D Polarized Light Imaging. NeuroImage 111 (2015)
Anh-Minh Huynh, Mehmet Eylem Kirlangic, Nicole Schubert, Martin Schober, Katrin Amunts, Karl Zilles, Markus Axer
Reconstructing a Series of Auto-Radiographic Images in Rat Brains. Bildverarbeitung für die Medizin (2015)
Miriam Menzel, Markus Axer, Hans De Raedt, Kristel Michielsen
Finite-Difference Time-Domain Simulation for Three-Dimensional Polarized Light Imaging. BrainComp (2015)
Nicole Schubert, Mehmet Eylem Kirlangic, Martin Schober, Anh-Minh Huynh, Katrin Amunts, Karl Zilles, Markus Axer
3D Reconstruction of Histological Rat Brain Images. Bildverarbeitung für die Medizin (2015)
Anna Lührs, Oliver Bücker, Markus Axer
Towards Large-Scale Fiber Orientation Models of the Brain - Automation and Parallelization of a Seeded Region Growing Segmentation of High-Resolution Brain Section Images. BrainComp (2015)
Katrin Amunts, Oliver Bücker, Markus Axer
Towards a Multiscale, High-Resolution Model of the Human Brain. BrainComp (2013)
Andrew V. Adinetz, Jiri Kraus, Markus Axer, Marcel Huysegoms, Stefan Köhnen, Dirk Pleiter
Computation of Mutual Information Metric for Image Registration on Multiple GPUs. Euro-Par Workshops (2013)
Melanie Kleiner, Markus Axer, David Gräßel, Julia Reckfort, Uwe Pietrzyk, Katrin Amunts, Timo Dickscheid
Classification of Ambiguous Nerve Fiber Orientations in 3D Polarized Light Imaging. MICCAI (1) (2012)
Jürgen Dammers, Lukas Breuer, Markus Axer, Melanie Kleiner, Björn Eiben, David Gräßel, Timo Dickscheid, Karl Zilles, Katrin Amunts, Nadim Joni Shah, Uwe Pietrzyk
Automatic identification of gray and white matter components in polarized light imaging. NeuroImage 59 (2) (2012)
Markus Axer, David Gräßel, Melanie Kleiner, Jürgen Dammers, Timo Dickscheid, Julia Reckfort, Tim Hütz, Björn Eiben, Uwe Pietrzyk, Karl Zilles, Katrin Amunts
High-Resolution Fiber Tract Reconstruction in the Human Brain by Means of Three-Dimensional Polarized Light Imaging. Frontiers Neuroinformatics 5 (2011)
Markus Axer, Katrin Amunts, David Gräßel, Christoph Palm, Jürgen Dammers, Hubertus Axer, Uwe Pietrzyk, Karl Zilles
A novel approach to the human connectome: Ultra-high resolution mapping of fiber tracts in the brain. NeuroImage 54 (2) (2011)
Hubertus Axer, Sindy Beck, Markus Axer, Friederike Schuchardt, Jörn Heepe, Anja Flücken, Martina Axer, Andreas Prescher, Otto W. Witte
Microstructural Analysis of Human White Matter Architecture Using Polarized Light Imaging: Views from Neuroanatomy. Frontiers Neuroinformatics 5 (2011)
Jürgen Dammers, Markus Axer, David Gräßel, Christoph Palm, Karl Zilles, Katrin Amunts, Uwe Pietrzyk
Signal enhancement in polarized light imaging by means of independent component analysis. NeuroImage 49 (2) (2010)
Hubertus Axer, Timo Krings, Markus Axer, Diedrich Graf v. Keyserlingk
Die Orientierung der Nervenfasern im menschlichen Gehirn sichtbar gemacht. Bildverarbeitung für die Medizin (2001)