Malgorzata Kotulska

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 6

Top Topics

Prediction Accuracy

Machine Learning

Solvent Accessibility

Top Venues

J. Comput. Biol.

Publications

Michal Burdukiewicz, Dominik Rafacz, Agnieszka Barbach, Katarzyna Hubicka, Laura Bakala, Anna Lassota, Jakub Stecko, Natalia Szymanska, Jakub Wojciechowski, Dominika Kozakiewicz, Natalia Szulc, Jaroslaw Chilimoniuk, Izabela Jeskowiak, Marlena Gasior-Glogowska, Malgorzata Kotulska
AmyloGraph: a comprehensive database of amyloid-amyloid interactions. Nucleic Acids Res. 51 (D1) (2023)
Alicja W. Nowakowska, Malgorzata Kotulska
Topological analysis as a tool for detection of abnormalities in protein-protein interaction data. Bioinform. 38 (16) (2022)
Pawel P. Wozniak, J. Pelc, M. Skrzypecki, Gert Vriend, Malgorzata Kotulska
Bio-knowledge-based filters improve residue-residue contact prediction accuracy. Bioinform. 34 (21) (2018)
Pawel P. Wozniak, Gert Vriend, Malgorzata Kotulska
Correlated mutations select misfolded from properly folded proteins. Bioinform. 33 (10) (2017)
Pawel P. Wozniak, Bogumil Konopka, J. Xu, Gert Vriend, Malgorzata Kotulska
Forecasting residue-residue contact prediction accuracy. Bioinform. 33 (21) (2017)
Pawel P. Wozniak, Jean-Christophe Nebel, Malgorzata Kotulska
Database of Peptides Susceptible to Aggregation as a Tool for Studying Mechanisms of Diseases of Civilization. ACIIDS (1) (2016)
Julita Kulbacka, Marek Kulbacki, Jakub Segen, Anna Choromanska, Jolanta Saczko, Magda Dubinska-Magiera, Malgorzata Kotulska
Automated Analysis of Images from Confocal Laser Scanning Microscopy Applied to Observation of Calcium Channel Subunits in Nerve Cell Model Line Subjected Electroporation and Calcium. ACIIDS (2) (2015)
Pawel P. Wozniak, Malgorzata Kotulska
AmyLoad: website dedicated to amyloidogenic protein fragments. Bioinform. 31 (20) (2015)
Pawel Gasior, Malgorzata Kotulska
FISH Amyloid - a new method for finding amyloidogenic segments in proteins based on site specific co-occurence of aminoacids. BMC Bioinform. 15 (2014)
Bogumil Konopka, Tomasz Golda, Malgorzata Kotulska
Evaluating the Significance of Protein Functional Similarity Based on Gene Ontology. J. Comput. Biol. 21 (11) (2014)
Jerzy Stanislawski, Malgorzata Kotulska, Olgierd Unold
Machine learning methods can replace 3D profile method in classification of amyloidogenic hexapeptides. BMC Bioinform. 14 (2013)
Malgorzata Kotulska, Olgierd Unold
On the amyloid datasets used for training PAFIG - how (not) to extend the experimental dataset of hexapeptides. BMC Bioinform. 14 (2013)
Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska
Probabilistic grammatical model for helix-helix contact site classification. Algorithms Mol. Biol. 8 (2013)
Bogumil Konopka, Jean-Christophe Nebel, Malgorzata Kotulska
Quality assessment of protein model-structures based on structural and functional similarities. BMC Bioinform. 13 (2012)
Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska
Towards 3D Modeling of Interacting TM Helix Pairs Based on Classification of Helix Pair Sequence. PRIB (2010)
Bogumil Konopka, Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska
Accuracy in Predicting Secondary Structure of Ionic Channels. ICCCI (SCI Volume) (2009)
Witold Dyrka, Andy T. Augousti, Malgorzata Kotulska
Ion flux through membrane channels - An enhanced algorithm for the Poisson-Nernst-Planck model. J. Comput. Chem. 29 (12) (2008)