Karl F. Freed

Publication Activity (10 Years)

Years Active: 2005-2018
Publications (10 Years): 2

Top Topics

Protein Folding

Ensemble Learning

Amino Acid Sequences

Molecular Dynamics

Top Venues

PLoS Comput. Biol.

Publications

John M. Jumper, Nabil F. Faruk, Karl F. Freed, Tobin R. Sosnick
Trajectory-based training enables protein simulations with accurate folding and Boltzmann ensembles in cpu-hours. PLoS Comput. Biol. 14 (12) (2018)
John M. Jumper, Nabil F. Faruk, Karl F. Freed, Tobin R. Sosnick
Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics. PLoS Comput. Biol. 14 (12) (2018)
Feng Zhao, Jian Peng, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu
A Probabilistic and Continuous Model of Protein Conformational Space for Template-Free Modeling. J. Comput. Biol. 17 (6) (2010)
Feng Zhao, Jian Peng, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu
A Probabilistic Graphical Model for Ab Initio Folding. RECOMB (2009)
Min-Yi Shen, Karl F. Freed
A simple method for faster nonbonded force evaluations. J. Comput. Chem. 26 (7) (2005)