Karissa Y. Sanbonmatsu

Publication Activity (10 Years)

Years Active: 2010-2020
Publications (10 Years): 4

Top Topics

Molecular Dynamics

Energy Landscape

Top Venues

PLoS Comput. Biol.

J. Comput. Chem.

J. Chem. Inf. Model.

Publications

Dylan Girodat, Avik K. Pati, Daniel S. Terry, Scott C. Blanchard, Karissa Y. Sanbonmatsu
Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein. PLoS Comput. Biol. 16 (11) (2020)
Doo Nam Kim, Dominik Gront, Karissa Y. Sanbonmatsu
Practical Considerations for Atomistic Structure Modeling with Cryo-EM Maps. J. Chem. Inf. Model. 60 (5) (2020)
Jaewoon Jung, Wataru Nishima, Marcus Daniels, Gavin Bascom, Chigusa Kobayashi, Adetokunbo Adedoyin, Michael E. Wall, Anna Lappala, Dominic Phillips, William Fischer, Chang-Shung Tung, Tamar Schlick, Yuji Sugita, Karissa Y. Sanbonmatsu
Scaling molecular dynamics beyond 100, 000 processor cores for large-scale biophysical simulations. J. Comput. Chem. 40 (21) (2019)
Susmita Roy, Heiko Lammert, Ryan L. Hayes, Bin Chen, Regan LeBlanc, T. Kwaku Dayie, José N. Onuchic, Karissa Y. Sanbonmatsu
A magnesium-induced triplex pre-organizes the SAM-II riboswitch. PLoS Comput. Biol. 13 (3) (2017)
Paul C. Whitford, Scott C. Blanchard, Jamie H. D. Cate, Karissa Y. Sanbonmatsu
Connecting the Kinetics and Energy Landscape of tRNA Translocation on the Ribosome. PLoS Comput. Biol. 9 (3) (2013)
Karissa Y. Sanbonmatsu
Supercomputing in biology: towards understanding living systems in atomic detail. SIGSOFT FSE (2010)
Jeffrey K. Noel, Paul C. Whitford, Karissa Y. Sanbonmatsu, José N. Onuchic
SMOG@ctbp: simplified deployment of structure-based models in GROMACS. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)