Jörg Ackermann

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 14

Top Topics

Signaling Pathways

Cdna Microarray

Cluster Analysis

Top Venues

PLoS Comput. Biol.

Publications

Florian J. Gisdon, Mariella Zunker, Jan Niclas Wolf, Kai Prüfer, Jörg Ackermann, Christoph Welsch, Ina Koch
Graph-theoretical prediction of biological modules in quaternary structures of large protein complexes. Bioinform. 40 (3) (2024)
Julienne Siptroth, Olga Moskalenko, Carsten Krumbiegel, Jörg Ackermann, Ina Koch, Heike Pospisil
Investigation of metabolic pathways from gut microbiome analyses regarding type 2 diabetes mellitus using artificial neural networks. Discov. Artif. Intell. 3 (1) (2023)
Simon Bernatz, Vitali Koch, Daniel Pinto dos Santos, Jörg Ackermann, Leon D. Grünewald, Inga Weitkamp, Ibrahim Yel, Simon S. Martin, Lukas Lenga, Jan-Erik Scholtz, Thomas J. Vogl, Scherwin Mahmoudi
Comparison of radiomics models and dual-energy material decomposition to decipher abdominal lymphoma in contrast-enhanced CT. Int. J. Comput. Assist. Radiol. Surg. 18 (10) (2023)
Yauheniya Zhdanovich, Jörg Ackermann, Peter J. Wild, Jens Köllermann, Katrin Bankov, Claudia Döring, Nadine Flinner, Henning Reis, Mike Wenzel, Benedikt Höh, Philipp Mandel, Thomas J. Vogl, Patrick Harter, Katharina Filipski, Ina Koch, Simon Bernatz
Evaluation of automatic discrimination between benign and malignant prostate tissue in the era of high precision digital pathology. BMC Bioinform. 24 (1) (2023)
Kira Trares, Jörg Ackermann, Ina Koch
The canonical and non-canonical NF-κB pathways and their crosstalk: A comparative study based on Petri nets. Biosyst. 211 (2022)
Leonie Amstein, Jörg Ackermann, Jennifer Hannig, Ivan Dikic, Simone Fulda, Ina Koch
Mathematical modeling of the molecular switch of TNFR1-mediated signaling pathways applying Petri net formalism and in silico knockout analysis. PLoS Comput. Biol. 18 (8) (2022)
Scherwin Mahmoudi, Simon S. Martin, Jörg Ackermann, Yauheniya Zhdanovich, Ina Koch, Thomas J. Vogl, Moritz H. Albrecht, Lukas Lenga, Simon Bernatz
Potential of high dimensional radiomic features to assess blood components in intraaortic vessels in non-contrast CT scans. BMC Medical Imaging 21 (1) (2021)
Jan Niclas Wolf, Marcus Keßler, Jörg Ackermann, Ina Koch
PTGL: extension to graph-based topologies of cryo-EM data for large protein structures. Bioinform. 37 (7) (2021)
Jennifer Hannig, Hendrik Schäfer, Jörg Ackermann, Marie Hebel, Tim Schäfer, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, Ina Koch
Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma. PLoS Comput. Biol. 16 (1) (2020)
Jennifer Hannig, Heiko Giese, Börje Schweizer, Leonie Amstein, Jörg Ackermann, Ina Koch
isiKnock: in silico knockouts in signaling pathways. Bioinform. 35 (5) (2019)
Leonie Amstein, Jörg Ackermann, Jennifer Scheidel, Simone Fulda, Ivan Dikic, Ina Koch
Manatee invariants reveal functional pathways in signaling networks. BMC Syst. Biol. 11 (1) (2017)
Hendrik Schäfer, Tim Schäfer, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, Ina Koch
CD30 cell graphs of Hodgkin lymphoma are not scale-free - an image analysis approach. Bioinform. 32 (1) (2016)
Jennifer Scheidel, Leonie Amstein, Jörg Ackermann, Ivan Dikic, Ina Koch
In Silico Knockout Studies of Xenophagic Capturing of Salmonella. PLoS Comput. Biol. 12 (12) (2016)
Melanie Laßek, Jens Weingarten, Martin Wegner, Benjamin F. Mueller, Marion Rohmer, Dominic Baeumlisberger, Tabiwang N. Arrey, Meike Hick, Jörg Ackermann, Amparo Acker-Palmer, Ina Koch, Ulrike Müller, Michael Karas, Walter Volknandt
APP Is a Context-Sensitive Regulator of the Hippocampal Presynaptic Active Zone. PLoS Comput. Biol. 12 (4) (2016)
Bogdan Belean, Monica Borda, Jörg Ackermann, Ina Koch, Ovidiu Balacescu
Unsupervised image segmentation for microarray spots with irregular contours and inner holes. BMC Bioinform. 16 (2015)
Heiko Giese, Jörg Ackermann, Ulrich Brandt, Ilka Wittig, Ina Koch
Cluster analysis and visualization techniques for large datasets in complexome profiling. PeerJ Prepr. 3 (2015)
Pavel Balazki, Klaus Lindauer, Jens Einloft, Jörg Ackermann, Ina Koch
MONALISA for stochastic simulations of Petri net models of biochemical systems. BMC Bioinform. 16 (2015)
Pavel Balazki, Klaus Lindauer, Jens Einloft, Jörg Ackermann, Ina Koch
Erratum to: MONALISA for stochastic simulations of Petri net models of biochemical systems. BMC Bioinform. 16 (2015)
Heiko Giese, Jörg Ackermann, Heinrich Heide, Lea Bleier, Stefan Dröse, Ilka Wittig, Ulrich Brandt, Ina Koch
NOVA: a software to analyze complexome profiling data. Bioinform. 31 (3) (2015)
Jens Einloft, Jörg Ackermann, Joachim Nöthen, Ina Koch
MonaLisa - visualization and analysis of functional modules in biochemical networks. Bioinform. 29 (11) (2013)
Tim Schäfer, Hendrik Schäfer, Alexander Schmitz, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, Ina Koch
Image database analysis of Hodgkin lymphoma. Comput. Biol. Chem. 46 (2013)
Stefanie Grunwald, Astrid Speer, Jörg Ackermann, Ina Koch
Petri net modelling of gene regulation of the Duchenne muscular dystrophy. Biosyst. 92 (2) (2008)