Jonathan M. Carlson

Publication Activity (10 Years)

Years Active: 2006-2015
Publications (10 Years): 1

Top Topics

Quantitative Analysis

Top Venues

PLoS Comput. Biol.

Publications

Paul Thatcher Edlefsen, Morgane Rolland, Tomer Hertz, Sodsai Tovanabutra, Andrew J. Gartland, Allan C. deCamp, Craig A. Magaret, Hasan Ahmed, Raphael Gottardo, Michal Juraska, Connor McCoy, Brendan B. Larsen, Eric Sanders-Buell, Chris Carrico, Sergey Menis, Meera Bose, Miguel A. Arroyo, Robert J. O'Connell, Sorachai Nitayaphan, Punnee Pitisuttithum, Jaranit Kaewkungwal, Supachai Rerks-Ngarm, Merlin L. Robb, Tatsiana Kirys, Ivelin Georgiev, Peter D. Kwong, Konrad Scheffler, Sergei L. Kosakovsky Pond, Jonathan M. Carlson, Nelson Michael, William R. Schief, James I. Mullins, Jerome H. Kim, Peter B. Gilbert
: Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial. PLoS Comput. Biol. 11 (2) (2015)
Bongshin Lee, Lev Nachmanson, George G. Robertson, Jonathan M. Carlson, David Heckerman
PhyloDet: a scalable visualization tool for mapping multiple traits to large evolutionary trees. Bioinform. 25 (19) (2009)
Jonathan M. Carlson, Zabrina L. Brumme, Christine M. Rousseau, Chanson J. Brumme, Philippa Matthews, Carl Myers Kadie, James I. Mullins, Bruce D. Walker, P. Richard Harrigan, Philip J. R. Goulder, David Heckerman
Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag. PLoS Comput. Biol. 4 (11) (2008)
Arijit Chakravarty, Jonathan M. Carlson, Radhika S. Khetani, Charles E. DeZiel, Robert H. Gross
-regulatory elements with non-contiguous critical residues. Bioinform. 23 (8) (2007)
Arijit Chakravarty, Jonathan M. Carlson, Radhika S. Khetani, Robert H. Gross
computational identification of DNA binding sites. BMC Bioinform. 8 (2007)
Jonathan M. Carlson, Arijit Chakravarty, Charles E. DeZiel, Robert H. Gross
motif discovery. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Jonathan M. Carlson, Arijit Chakravarty, Radhika S. Khetani, Robert H. Gross
Bounded search for de novo identification of degenerate cis-regulatory elements. BMC Bioinform. 7 (2006)
Jonathan M. Carlson, Arijit Chakravarty, Robert H. Gross
BEAM: A Beam Search Algorithm for the Identification of Cis-Regulatory Elements in Groups of Genes. J. Comput. Biol. 13 (3) (2006)