John D. Holliday

Publication Activity (10 Years)

Years Active: 1989-2015
Publications (10 Years): 2

Top Topics

Euclidean Distance

Multiresolution

Similarity Coefficient

Similarity Searching

Top Venues

J. Chem. Inf. Model.

J. Cheminformatics

Int. J. Chemoinformatics Chem. Eng.

Publications

Edmund Duesbury, John D. Holliday, Peter Willett
Maximum Common Substructure-Based Data Fusion in Similarity Searching. J. Chem. Inf. Model. 55 (2) (2015)
John D. Holliday, Nor Sani, Peter Willett
Calculation of Substructural Analysis Weights Using a Genetic Algorithm. J. Chem. Inf. Model. 55 (2) (2015)
Pedro Franco, Nuria Porta, John D. Holliday, Peter Willett
The use of 2D fingerprint methods to support the assessment of structural similarity in orphan drug legislation. J. Cheminformatics 6 (1) (2014)
Shereena M. Arif, John D. Holliday, Peter Willett
Comparison of chemical similarity measures using different numbers of query structures. J. Inf. Sci. 39 (1) (2013)
John D. Holliday, Peter Willett, Hua Xiang
Interactions Between Weighting Scheme and Similarity Coefficient in Similarity-Based Virtual Screening. Int. J. Chemoinformatics Chem. Eng. 2 (2) (2012)
Roberto Todeschini, Viviana Consonni, Hua Xiang, John D. Holliday, Paolo Massimo Buscema, Peter Willett
Similarity Coefficients for Binary Chemoinformatics Data: Overview and Extended Comparison Using Simulated and Real Data Sets. J. Chem. Inf. Model. 52 (11) (2012)
John D. Holliday, Evangelos Kanoulas, Nurul Malim, Peter Willett
Multiple search methods for similarity-based virtual screening: analysis of search overlap and precision. J. Cheminformatics 3 (2011)
Shereena M. Arif, John D. Holliday, Peter Willett
Inverse Frequency Weighting of Fragments for Similarity-Based Virtual Screening. J. Chem. Inf. Model. 50 (8) (2010)
Eleanor J. Gardiner, Valerie J. Gillet, Maciej Haranczyk, Jérôme Hert, John D. Holliday, Nurul Malim, Yogendra Patel, Peter Willett
Turbo similarity searching: Effect of fingerprint and dataset on virtual-screening performance. Stat. Anal. Data Min. 2 (2) (2009)
Aysha Al Khalifa, Maciej Haranczyk, John D. Holliday
Comparison of Nonbinary Similarity Coefficients for Similarity Searching, Clustering and Compound Selection. J. Chem. Inf. Model. 49 (5) (2009)
Jenny Chen, John D. Holliday, John Bradshaw
A Machine Learning Approach to Weighting Schemes in the Data Fusion of Similarity Coefficients. J. Chem. Inf. Model. 49 (2) (2009)
Shereena M. Arif, Jérôme Hert, John D. Holliday, Nurul Malim, Peter Willett
Enhancing the Effectiveness of Fingerprint-Based Virtual Screening: Use of Turbo Similarity Searching and of Fragment Frequencies of Occurrence. PRIB (2009)
Shereena M. Arif, John D. Holliday, Peter Willett
Analysis and use of fragment-occurrence data in similarity-based virtual screening. J. Comput. Aided Mol. Des. 23 (9) (2009)
Chia-Wei Chu, John D. Holliday, Peter Willett
Effect of Data Standardization on Chemical Clustering and Similarity Searching. J. Chem. Inf. Model. 49 (2) (2009)
Maciej Haranczyk, John D. Holliday, Peter Willett, Maciej Gutowski
Structure and singly occupied molecular orbital analysis of anionic tautomers of guanine. J. Comput. Chem. 29 (8) (2008)
Maciej Haranczyk, John D. Holliday
Comparison of Similarity Coefficients for Clustering and Compound Selection. J. Chem. Inf. Model. 48 (3) (2008)
John D. Holliday, Sarah L. Rodgers, Peter Willett, Min-You Chen, Mahdi Mahfouf, Kevin Lawson, Graham Mullier
-Means Clustering Method. J. Chem. Inf. Model. 44 (3) (2004)
John D. Holliday, Naomie Salim, Martin Whittle, Peter Willett
Analysis and Display of the Size Dependence of Chemical Similarity Coefficients. J. Chem. Inf. Comput. Sci. 43 (3) (2003)
Neal Bishop, Valerie J. Gillet, John D. Holliday, Peter Willett
Chemoinformatics Research at the University of Sheffield: A History and Citation Analysis. J. Inf. Sci. 29 (4) (2003)
John D. Holliday, Stephen P. Jelfs, Peter Willett, Peter Gedeck
Calculation of Intersubstituent Similarity Using R-Group Descriptors. J. Chem. Inf. Comput. Sci. 43 (2) (2003)
Naomie Salim, John D. Holliday, Peter Willett
Combination of Fingerprint-Based Similarity Coefficients Using Data Fusion. J. Chem. Inf. Comput. Sci. 43 (2) (2003)
Michael F. Lynch, John D. Holliday
The Sheffield Generic Structures Project-a Retrospective Review. J. Chem. Inf. Comput. Sci. 36 (5) (1996)
John D. Holliday, Michael F. Lynch
Computer Storage and Retrieval of Generic Chemical Structures in Patents, 17. Evaluation of the Refined Search. J. Chem. Inf. Comput. Sci. 35 (4) (1995)
John D. Holliday, Michael F. Lynch
Computer Storage and Retrieval of Generic Chemical Structures in Patents, 16. The Refined Search: An Algorithm for Matching Components of Generic Chemical Structures at the Atom-Bond Level. J. Chem. Inf. Comput. Sci. 35 (1) (1995)
John D. Holliday, Geoffrey M. Downs, Valerie J. Gillet, Michael F. Lynch, Winfried Dethlefsen
Evaluation of the screening stages of the Sheffield Research Project on Computer Storage and Retrieval of Generic Chemical Structures in Patents. J. Chem. Inf. Comput. Sci. 34 (1) (1994)
John D. Holliday, Geoffrey M. Downs, Valerie J. Gillet, Michael F. Lynch
Computer storage and retrieval of generic chemical structures in patents. 15. Generation of topological fragment descriptors from nontopological representations of generic structure components. J. Chem. Inf. Comput. Sci. 33 (3) (1993)
John D. Holliday, Geoffrey M. Downs, Valerie J. Gillet, Michael F. Lynch
Computer storage and retrieval of generic chemical structures in patents. 14. Fragment generation from generic structures. J. Chem. Inf. Comput. Sci. 32 (5) (1992)
Winfried Dethlefsen, Michael F. Lynch, Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, John M. Barnard
Computer storage and retrieval of generic chemical structures in patents. 12. Principles of search operations involving parameter lists: matching-relations, user-defined match levels, and transition from the reduced graph search to the refined search. J. Chem. Inf. Comput. Sci. 31 (2) (1991)
Winfried Dethlefsen, Michael F. Lynch, Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, John M. Barnard
Computer storage and retrieval of generic chemical structures in patents. 11. Theoretical aspects of the use of structure languages in a retrieval system. J. Chem. Inf. Comput. Sci. 31 (2) (1991)
Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, Michael F. Lynch, Winfried Dethlefsen
Computer storage and retrieval of generic chemical structures in patents. 13. Reduced graph generation. J. Chem. Inf. Comput. Sci. 31 (2) (1991)
Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch
Review of ring perception algorithms for chemical graphs. J. Chem. Inf. Comput. Sci. 29 (3) (1989)
Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch
Computer storage and retrieval of generic chemical structures in patents. 9. An algorithm to find the extended set of smallest rings in structurally explicit generics. J. Chem. Inf. Comput. Sci. 29 (3) (1989)
Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch
Theoretical aspects of ring perception and development of the extended set of smallest rings concept. J. Chem. Inf. Comput. Sci. 29 (3) (1989)
Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch
Computer storage and retrieval of generic chemical structures in patents. 10. Assignment and logical bubble-up of ring screens for structurally explicit generics. J. Chem. Inf. Comput. Sci. 29 (3) (1989)