Joe Stubbs

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 35

Top Topics

Workflow Engine

Rapid Development

Machine Learning

Top Venues

Publications

Joe Stubbs, Smruti Padhy, Richard Cardone, Steve Black
CloudSec: An Extensible Automated Reasoning Framework for Cloud Security Policies. ACR (2024)
Joe Stubbs, Dhanny Indrakusuma, Christian Garcia, François Halbach, Cody Hammock, Nathan Dean Freeman, Anagha Jamthe, Michael Packard, Alexander Fields, Gilbert Curbelo
A Comprehensive Cloud Architecture for Machine Learning-enabled Research. PEARC (2024)
Maytal Dahan, Joe Stubbs, Sandra Gesing
Introduction to the Minitrack on Software Sustainability: Research on Usability, Maintainability, and Reproducibility Minitrack. HICSS (2024)
Jeanette M. Sperhac, Sandra Gesing, Michael G. Zentner, Claire Stirm, Rob Quick, Joe Stubbs
AI and Science Gateways: A Promising Combination for Accelerating Science and Research Computing. PEARC (2024)
Richard Cardone, Smruti Padhy, Steve Black, Joe Stubbs, Sean B. Cleveland
A Decentralized Authorization and Security Framework for Distributed Research Workflows. COMPSAC (2023)
Nathan Dean Freeman, Joe Stubbs, Richard Cardone, Christian Garcia
Detailed Functional Overview of an API and Workflow Engine for Scientific Research Computing. PEARC (2023)
Sahil Samar, Mia Chen, Jack Karpinski, Michael Ray, Archita Sarin, Christian Garcia, Matthew Lange, Joe Stubbs, Mary Thomas
Development of Authenticated Clients and Applications for ICICLE CI Services - Final Report for the REHS Program, June-August, 2022. CoRR (2023)
Sandra Gesing, Maytal Dahan, Joe Stubbs
Introduction to the Minitrack on Software Sustainability: Strategies for Long-Lasting and Usable Software. HICSS (2023)
Yamei Tu, Xiaoqi Wang, Rui Qiu, Han-Wei Shen, Michelle Miller, Jinmeng Rao, Song Gao, Patrick R. Huber, Allan Hollander, Matthew Lange, Christian Garcia, Joe Stubbs
An Interactive Knowledge and Learning Environment in Smart Foodsheds. IEEE Computer Graphics and Applications 43 (3) (2023)
Joe Stubbs, Anagha Jamthe, Nathan Dean Freeman, Mike Packard, Gilbert Curbelo, Cody Hammock
Scalable Scientific Interactive Research Computing With Project Scinco. Comput. Sci. Eng. 25 (1) (2023)
Richard Cardone, Smruti Padhy, Steve Black, Sean Cleveland, Joe Stubbs
A Decentralized Authorization and Security Framework for Distributed Research Workflows. CoRR (2023)
Joe Stubbs, Smruti Padhy, Richard Cardone, Steve Black
CloudSec: An Extensible Automated Reasoning Framework for Cloud Security Policies. CoRR (2023)
Nathan Dean Freeman, Joe Stubbs, Richard Cardone
Workflow management for scientific research computing with Tapis Workflows: Architecture and Design Decisions behind Software for Research Computing Pipelines. PEARC (2022)
Eric Lam, Sean Cleveland, Richard Cardone, Gwen A. Jacobs, Boyd Wilson, Cole McKnight, Joe Stubbs
Extending Tapis Workflow Management Framework with Elastic Google Cloud Distributed System using CloudyCluster by Omnibond. PEARC (2022)
Mohammed Eslami, Amin Espah Borujeni, Hamed Eramian, Mark Weston, George Zheng, Joshua Urrutia, Carolyn Corbet, Diveena Becker, Paul Maschhoff, Katie Clowers, Alexander Cristofaro, Hamid Doost Hosseini, D. Benjamin Gordon, Yuval Dorfan, Jedediah Singer, Matthew Vaughn, Niall Gaffney, John Fonner, Joe Stubbs, Christopher A. Voigt, Enoch Yeung
Prediction of whole-cell transcriptional response with machine learning. Bioinform. 38 (2) (2022)
Maytal Dahan, Sandra Gesing, Joe Stubbs
Introduction to the Minitrack on Software Sustainability: Strategies for Long-Lasting and Usable Research Software. HICSS (2022)
Richard Cardone, Joe Stubbs, Steve Black, Christian Garcia, Anagha Jamthe, Mike Packard, Smruti Padhy
A Design Pattern for Recoverable Job Management. PEARC (2022)
Joe Stubbs, Suresh Marru, Daniel Mejia, Daniel S. Katz, Kyle Chard, Maytal Dahan, Marlon E. Pierce, Michael G. Zentner
Toward Interoperable Cyberinfrastructure: Common Descriptions for Computational Resources and Applications. CoRR (2021)
Michael Packard, Joe Stubbs, Justin Drake, Christian Garcia
Real-World, Self-Hosted Kubernetes Experience. PEARC (2021)
Sean B. Cleveland, Anagha Jamthe, Smruti Padhy, Joe Stubbs, Steven Terry, Julia Looney, Richard Cardone, Michael Packard, Maytal Dahan, Gwen A. Jacobs
Tapis v3 Streams API: Time-series and data-driven event support in science gateway infrastructure. Concurr. Comput. Pract. Exp. 33 (19) (2021)
Smruti Padhy, Joe Stubbs
Designing and Proving Properties of the Abaco Autoscaler Using TLA+. VSTTE (2021)
Joe Stubbs, Richard Cardone, Sean B. Cleveland, Gwen A. Jacobs, Michael Packard, Anagha Jamthe, Smruti Padhy, Steve Black, Steve Terry, Julia Looney, Joseph Meiring, Maytal Dahan
Sustainability in the Tapis Framework. HICSS (2021)
Joe Stubbs, Suresh Marru, Daniel Mejia, John-Paul Navarro, Eric Franz, Steve Black, Dimuthu Wannipurage, Sudhakar Pamidighantam, Claire Stirm, Maytal Dahan, Marlon E. Pierce, Michael G. Zentner
Common Resource Descriptions for Interoperable Gateway Cyberinfrastructure. PEARC (2021)
Smruti Padhy, Anagha Jamthe, Sean B. Cleveland, Jack A. Smith, Joe Stubbs, Christian Garcia, Michael Packard, Steve Terry, Julia Looney, Richard Cardone, Maytal Dahan, Gwen A. Jacobs
Building Tapis v3 Streams API Support for Real-Time Streaming Data Event-Driven Workflows. PEARC (2021)
Maytal Dahan, Joe Stubbs, Sandra Gesing
Introduction to the Minitrack on Software Survivability: Strategies for Long-Lasting and Usable Research Software. HICSS (2021)
Joe Stubbs, Suresh Marru, Daniel Mejia, Daniel S. Katz, Kyle Chard, Maytal Dahan, Marlon E. Pierce, Michael G. Zentner
Toward Interoperable Cyberinfrastructure: Common Descriptions for Computational Resources and Applications. PEARC (2020)
Kate Keahey, Jason Anderson, Zhuo Zhen, Pierre Riteau, Paul Ruth, Dan Stanzione, Mert Cevik, Jacob Colleran, Haryadi S. Gunawi, Cody Hammock, Joe Mambretti, Alexander Barnes, François Halbah, Alex Rocha, Joe Stubbs
Lessons Learned from the Chameleon Testbed. USENIX Annual Technical Conference (2020)
Sean B. Cleveland, Anagha Jamthe, Smruti Padhy, Joe Stubbs, Michael Packard, Julia Looney, Steve Terry, Richard Cardone, Maytal Dahan, Gwen A. Jacobs
Tapis API Development with Python: Best Practices In Scientific REST API Implementation: Experience implementing a distributed Stream API. PEARC (2020)
Joe Stubbs, Julia Looney, Marjo Poindexter, Elias Chalhoub, Gregory J. Zynda, Erik S. Ferlanti, Matthew Vaughn, John M. Fonner, Maytal Dahan
Integrating Jupyter into Research Computing Ecosystems: Challenges and Successes in Architecting JupyterHub for Collaborative Research Computing Ecosystems. PEARC (2020)
Joe Stubbs, Gwen A. Jacobs, Maytal Dahan, Sean B. Cleveland, Anagha Jamthe, Steve Black, Richard Cardone, Smruti Padhy, Julia Looney, Joseph Meiring, Mike Packard, Steve Terry
Tapis early adopter workshop. PEARC Companion (2020)
Anagha Jamthe, Mike Packard, Joe Stubbs, Gilbert Curbelo, Roseline Shapi, Elias Chalhoub
SSH-Backed API Performance Case Study. Bench (2019)
Emre H. Brookes, Joe Stubbs
GenApp, Containers and Abaco: Technical Paper. PEARC (2019)
Joe Stubbs, Matthew Vaughn, Julia Looney
Rapid Development of Scalable, Distributed Computation with Abaco. IWSG (2018)
Sean B. Cleveland, Rion Dooley, David Perry, Joe Stubbs, John M. Fonner, Gwen A. Jacobs
Building Science Gateway Infrastructure in the Middle of the Pacific and Beyond: Experiences using the Agave Deployer and Agave Platform to Build Science Gateways. PEARC (2018)
Joe Stubbs, Stephen Talley, Walter Moreira, Rion Dooley, Ann Stapleton
Endofday: A Container Workflow Engine for Scalable, Reproducible Computation. IWSG (2016)
Matthew R. Hanlon, Matthew Vaughn, Stephen A. Mock, Rion Dooley, Walter Moreira, Joe Stubbs, Christopher Town, Jason R. Miller, Vivek Krishnakumar, Erik S. Ferlanti, Eleanor Pence
Araport: an application platform for data discovery. Concurr. Comput. Pract. Exp. 27 (16) (2015)
Rion Dooley, Joe Stubbs, Jim Basney
The MyProxy Gateway. IWSG (2014)
Jim Basney, Jeff Gaynor, Suresh Marru, Marlon E. Pierce, Thejaka Amila Kanewala, Rion Dooley, Joe Stubbs
Integrating Science Gateways with XSEDE Security: A Survey of Credential Management Approaches. XSEDE (2014)
Rion Dooley, Joe Stubbs
Dynamically Provisioning Portable Gateway Infrastructure Using Docker and Agave. XSEDE (2014)
Matthew R. Hanlon, Matthew Vaughn, Stephen A. Mock, Rion Dooley, Walter Moreira, Joe Stubbs, Christopher Town, Jason R. Miller, Vivek Krishnakumar, Erik S. Ferlanti, Eleanor Pence
The arabidopsis information portal: an application platform for data discovery. GCE@SC (2014)