Jo Vandesompele

Publication Activity (10 Years)

Years Active: 2001-2022
Publications (10 Years): 9

Top Topics

High Throughput

Top Venues

Nucleic Acids Res.

Database J. Biol. Databases Curation

Publications

Annelien Morlion, Eva Hulstaert, Marieke Vromman, Jasper Anckaert, Celine Everaert, Jo Vandesompele, Pieter Mestdagh
CiLiQuant: Quantification of RNA Junction Reads Based on Their Circular or Linear Transcript Origin. Frontiers Bioinform. 2 (2022)
Marieke Vromman, Jasper Anckaert, Jo Vandesompele, Pieter-Jan Volders
CIRCprimerXL: Convenient and High-Throughput PCR Primer Design for Circular RNA Quantification. Frontiers Bioinform. 2 (2022)
Marieke Vromman, Jo Vandesompele, Pieter-Jan Volders
Closing the circle: current state and perspectives of circular RNA databases. Briefings Bioinform. 22 (1) (2021)
Alemu Takele Assefa, Jo Vandesompele, Olivier Thas
SPsimSeq: semi-parametric simulation of bulk and single-cell RNA-sequencing data. Bioinform. 36 (10) (2020)
Pieter-Jan Volders, Jasper Anckaert, Kenneth Verheggen, Justine Nuytens, Lennart Martens, Pieter Mestdagh, Jo Vandesompele
LNCipedia 5: towards a reference set of human long non-coding RNAs. Nucleic Acids Res. 47 (Database-Issue) (2019)
Francisco Avila Cobos, Jo Vandesompele, Pieter Mestdagh, Katleen De Preter
Computational deconvolution of transcriptomics data from mixed cell populations. Bioinform. 34 (11) (2018)
Francisco Avila Cobos, Jasper Anckaert, Pieter-Jan Volders, Celine Everaert, Dries Rombaut, Jo Vandesompele, Katleen De Preter, Pieter Mestdagh
Zipper plot: visualizing transcriptional activity of genomic regions. BMC Bioinform. 18 (1) (2017)
Steve Lefever, Jasper Anckaert, Pieter-Jan Volders, Manuel Luypaert, Jo Vandesompele, Pieter Mestdagh
decodeRNA - predicting non-coding RNA functions using guilt-by-association. Database J. Biol. Databases Curation 2017 (2017)
Steve Lefever, Filip Pattyn, Bram De Wilde, Frauke Coppieters, Sarah De Keulenaer, Jan Hellemans, Jo Vandesompele
High-throughput PCR assay design for targeted resequencing using primerXL. BMC Bioinform. 18 (1) (2017)
Jan Ruijter, Steve Lefever, Jasper Anckaert, Jan Hellemans, Michael W. Pfaffl, Vladimir Benes, Stephen Bustin, Jo Vandesompele, Andreas Untergasser
RDML-Ninja and RDMLdb for standardized exchange of qPCR data. BMC Bioinform. 16 (2015)
Pieter-Jan Volders, Kenneth Verheggen, Gerben Menschaert, Klaas Vandepoele, Lennart Martens, Jo Vandesompele, Pieter Mestdagh
An update on LNCipedia: a database for annotated human lncRNA sequences. Nucleic Acids Res. 43 (Database-Issue) (2015)
Gert Van Peer, Steve Lefever, Jasper Anckaert, Anneleen Beckers, Ali Rihani, Alan Van Goethem, Pieter-Jan Volders, Fjoralba Zeka, Maté Ongenaert, Pieter Mestdagh, Jo Vandesompele
miRBase Tracker: keeping track of microRNA annotation changes. Database J. Biol. Databases Curation 2014 (2014)
Pieter-Jan Volders, Kenny Helsens, Xiaowei Wang, Björn Menten, Lennart Martens, Kris Gevaert, Jo Vandesompele, Pieter Mestdagh
LNCipedia: a database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Res. 41 (Database-Issue) (2013)
Joachim M. De Schrijver, Kim De Leeneer, Steve Lefever, Nick Sabbe, Filip Pattyn, Filip Van Nieuwerburgh, Paul Coucke, Dieter Deforce, Jo Vandesompele, Sofie Bekaert, Jan Hellemans, Wim Van Criekinge
Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline. BMC Bioinform. 11 (2010)
Steve Lefever, Jo Vandesompele, Frank Speleman, Filip Pattyn
RTPrimerDB: the portal for real-time PCR primers and probes. Nucleic Acids Res. 37 (Database-Issue) (2009)
Filip Pattyn, Jasmien Hoebeeck, Piet Robbrecht, Evi Michels, Anne De Paepe, Guy Bottu, David Coornaert, Robert Herzog, Frank Speleman, Jo Vandesompele
methBLAST and methPrimerDB: web-tools for PCR based methylation analysis. BMC Bioinform. 7 (2006)
Filip Pattyn, Piet Robbrecht, Anne De Paepe, Frank Speleman, Jo Vandesompele
RTPrimerDB: the real-time PCR primer and probe database, major update 2006. Nucleic Acids Res. 34 (Database-Issue) (2006)
Björn Menten, Filip Pattyn, Katleen De Preter, Piet Robbrecht, Evi Michels, Karen Buysse, Geert Mortier, Anne De Paepe, Steven Van Vooren, Joris Robert Vermeesch, Yves Moreau, Bart De Moor, Stefan Vermeulen, Frank Speleman, Jo Vandesompele
arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays. BMC Bioinform. 6 (2005)
Filip Pattyn, Frank Speleman, Anne De Paepe, Jo Vandesompele
RTPrimerDB: the Real-Time PCR primer and probe database. Nucleic Acids Res. 31 (1) (2003)
Ina I. Vandenbroucke, Jo Vandesompele, Anne De Paepe, Ludwine Messiaen
Quantification of splice variants using real-time PCR. Nucleic Acids Res. 29 (13) (2001)