Jiayu Shang

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 16

Top Topics

Protein Classification

Supervised Learning

Top Venues

Briefings Bioinform.

Publications

Yongxin Ji, Jiayu Shang, Xubo Tang, Yanni Sun
HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer. Bioinform. 39 (5) (2023)
Herui Liao, Jiayu Shang, Yanni Sun
GDmicro: classifying host disease status with GCN and deep adaptation network based on the human gut microbiome data. Bioinform. 39 (12) (2023)
Jing-Zhe Jiang, Wen-Guang Yuan, Jiayu Shang, Ying-Hui Shi, Li-Ling Yang, Min Liu, Peng Zhu, Tao Jin, Yanni Sun, Li-Hong Yuan
Virus classification for viral genomic fragments using PhaGCN2. Briefings Bioinform. 24 (1) (2023)
Jiayu Shang, Cheng Peng, Xubo Tang, Yanni Sun
PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer. Bioinform. 39 (Supplement-1) (2023)
Jiayu Shang, Xubo Tang, Yanni Sun
PhaTYP: predicting the lifestyle for bacteriophages using BERT. Briefings Bioinform. 24 (1) (2023)
Jiayu Shang, Yanni Sun
CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model. Briefings Bioinform. 23 (5) (2022)
Jiayu Shang, Xubo Tang, Ruocheng Guo, Yanni Sun
Accurate identification of bacteriophages from metagenomic data using Transformer. Briefings Bioinform. 23 (4) (2022)
Xubo Tang, Jiayu Shang, Yanni Sun
RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data. Briefings Bioinform. 23 (2) (2022)
Dehan Cai, Jiayu Shang, Yanni Sun
HaploDMF: viral haplotype reconstruction from long reads via deep matrix factorization. Bioinform. 38 (24) (2022)
Jiayu Shang, Yanni Sun
CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model. CoRR (2022)
Jiayu Shang, Yanni Sun
Detecting the hosts of bacteriophages using GCN-based semi-supervised learning. CoRR (2021)
Jiayu Shang, Jingzhe Jiang, Yanni Sun
Bacteriophage classification for assembled contigs using graph convolutional network. Bioinform. 37 (Supplement) (2021)
Jiayu Shang, Jingzhe Jiang, Yanni Sun
Bacteriophage classification for assembled contigs using Graph Convolutional Network. CoRR (2021)
Du Nan, Jiayu Shang, Yanni Sun
ProDOMA: improve PROtein DOMAin classification for third-generation sequencing reads using deep learning. CoRR (2020)
Jiao Chen, Jiayu Shang, Jianrong Wang, Yanni Sun
A binning tool to reconstruct viral haplotypes from assembled contigs. BMC Bioinform. 20 (1) (2019)
Shiren Li, Jiayu Shang, Zhikui Duan, Junwei Huang
Fast detection method of quick response code based on run-length coding. IET Image Process. 12 (4) (2018)