Jed A. Fuhrman

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 8

Top Topics

Sequence Analysis

Top Venues

Briefings Bioinform.

Publications

Wenxuan Zuo, Zifan Zhu, Yuxuan Du, Yi-Chun Yeh, Jed A. Fuhrman, Jinchi Lv, Yingying Fan, Fengzhu Sun
DeepLINK-T: deep learning inference for time series data using knockoffs and LSTM. CoRR (2024)
Yuxuan Du, Sarah M. Laperriere, Jed A. Fuhrman, Fengzhu Sun
Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial Regression. J. Comput. Biol. 29 (2) (2022)
Ziye Wang, Ying Wang, Jed A. Fuhrman, Fengzhu Sun, Shanfeng Zhu
Corrigendum to: Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences. Briefings Bioinform. 22 (1) (2021)
Ziye Wang, Ying Wang, Jed A. Fuhrman, Fengzhu Sun, Shanfeng Zhu
Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences. Briefings Bioinform. 21 (3) (2020)
Jie Ren, Kai Song, Chao Deng, Nathan A. Ahlgren, Jed A. Fuhrman, Yi Li, Xiaohui Xie, Ryan Poplin, Fengzhu Sun
Identifying viruses from metagenomic data using deep learning. Quant. Biol. 8 (1) (2020)
Yang Young Lu, Ting Chen, Jed A. Fuhrman, Fengzhu Sun
COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge. Bioinform. 33 (6) (2017)
Yang Young Lu, Kujin Tang, Jie Ren, Jed A. Fuhrman, Michael S. Waterman, Fengzhu Sun
CAFE: aCcelerated Alignment-FrEe sequence analysis. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Mengge Zhang, Lianping Yang, Jie Ren, Nathan A. Ahlgren, Jed A. Fuhrman, Fengzhu Sun
Prediction of virus-host infectious association by supervised learning methods. BMC Bioinform. 18 (S-3) (2017)
Li C. Xia, Dongmei Ai, Jacob A. Cram, Xiaoyi Liang, Jed A. Fuhrman, Fengzhu Sun
Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains. BMC Bioinform. 16 (2015)
Li C. Xia, Dongmei Ai, Jacob A. Cram, Jed A. Fuhrman, Fengzhu Sun
Efficient statistical significance approximation for local similarity analysis of high-throughput time series data. Bioinform. 29 (2) (2013)
Li C. Xia, Joshua A. Steele, Jacob A. Cram, Zoe G. Cardon, Sheri L. Simmons, Joseph J. Vallino, Jed A. Fuhrman, Fengzhu Sun
Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates. BMC Syst. Biol. 5 (S-2) (2011)
Quansong Ruan, Joshua A. Steele, Michael S. Schwalbach, Jed A. Fuhrman, Fengzhu Sun
A dynamic programming algorithm for binning microbial community profiles. Bioinform. 22 (12) (2006)
Quansong Ruan, Debojyoti Dutta, Michael S. Schwalbach, Joshua A. Steele, Jed A. Fuhrman, Fengzhu Sun
Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors. Bioinform. 22 (20) (2006)