Jadwiga R. Bienkowska

Publication Activity (10 Years)

Years Active: 1997-2019
Publications (10 Years): 3

Top Topics

Dimensionality Reduction

Statistical Significance

Top Venues

J. Comput. Biol.

Publications

Shibing Deng, Joy Hsu, Jadwiga R. Bienkowska, Paul A. Rejto, Tao Xie
Detecting somatic mutations with high accuracy in plasma cell-free DNA with TNER2. BIBM (2019)
Shibing Deng, Maruja Lira, Donghui Huang, Kai Wang, Crystal Valdez, Jennifer Kinong, Paul A. Rejto, Jadwiga R. Bienkowska, James Hardwick, Tao Xie
TNER: a novel background error suppression method for mutation detection in circulating tumor DNA. BMC Bioinform. 19 (1) (2018)
Sean Simmons, Jian Peng, Jadwiga R. Bienkowska, Bonnie Berger
Discovering What Dimensionality Reduction Really Tells Us About RNA-Seq Data. J. Comput. Biol. 22 (8) (2015)
Raghavendra Hosur, Suzanne Szak, Alice Thai, Norm Allaire, Jadwiga R. Bienkowska
ProbeSelect: selecting differentially expressed probes in transcriptional profile data. Bioinform. 30 (4) (2014)
Heming Xing, Paul D. McDonagh, Jadwiga R. Bienkowska, Tanya Cashorali, Karl Runge, Robert E. Miller, Dave DeCaprio, Bruce Church, Ronenn Roubenoff, Iya G. Khalil, John Carulli
Causal Modeling Using Network Ensemble Simulations of Genetic and Gene Expression Data Predicts Genes Involved in Rheumatoid Arthritis. PLoS Comput. Biol. 7 (3) (2011)
Vinay Pulim, Bonnie Berger, Jadwiga R. Bienkowska
Optimal contact map alignment of protein-protein interfaces. Bioinform. 24 (20) (2008)
Vinay Pulim, Jadwiga R. Bienkowska, Bonnie Berger
Lthreader: Prediction of Ligand-Receptor Interactions Using Localized Threading. Pacific Symposium on Biocomputing (2007)
Peter Warren, Deanne M. Taylor, Paolo G. V. Martini, Jennifer Jackson, Jadwiga R. Bienkowska
PANP - a New Method of Gene Detection on Oligonucleotide Expression Arrays. BIBE (2007)
Boris Hayete, Jadwiga R. Bienkowska
GOTrees: Predicting GO Associations from Protein Domain Composition Using Decision Trees. Pacific Symposium on Biocomputing (2005)
Jadwiga R. Bienkowska
Using fold recognition to search for useful proteins: Bayesian approach to fold recognition. Briefings Bioinform. 3 (1) (2002)
Jadwiga R. Bienkowska, Hongxian He, Temple F. Smith
Automatic Pattern Embedding in Protein Structure Models. IEEE Intell. Syst. 16 (6) (2001)
Jadwiga R. Bienkowska, Lihua Yu, Sophia Zarakhovich, Robert G. Rogers, Temple F. Smith
Comprehensive statistical method for protein fold recognition. RECOMB (2000)
Jadwiga R. Bienkowska, Robert G. Rogers, Temple F. Smith
A method for optimal design of a threading scoring function. RECOMB (1999)
Jadwiga R. Bienkowska, Robert G. Rogers, Temple F. Smith
Performance of Threading Scoring Functions Designed Using New Optimization Method. J. Comput. Biol. 6 (3/4) (1999)
Temple F. Smith, Loredana Lo Conte, Jadwiga R. Bienkowska, Chrysanthe Gaitatzes, Robert G. Rogers, Richard H. Lathrop
Current Limitations to Protein Threading Approaches. J. Comput. Biol. 4 (3) (1997)
Temple F. Smith, Loredana Lo Conte, Jadwiga R. Bienkowska, Robert G. Rogers, Chrysanthe Gaitatzes, Richard H. Lathrop
The threading approach to the inverse protein folding problem. RECOMB (1997)