Hong-Yu Ou

Publication Activity (10 Years)

Years Active: 2003-2022
Publications (10 Years): 8

Top Topics

Molecular Biology

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Yumeng Zhang, Yangming Zhang, Yi Xiong, Hui Wang, Zixin Deng, Jiangning Song, Hong-Yu Ou
T4SEfinder: a bioinformatics tool for genome-scale prediction of bacterial type IV secreted effectors using pre-trained protein language model. Briefings Bioinform. 23 (1) (2022)
Meng Wang, Ying-Xian Goh, Cui Tai, Hui Wang, Zixin Deng, Hong-Yu Ou
VRprofile2: detection of antibiotic resistance-associated mobilome in bacterial pathogens. Nucleic Acids Res. 50 (W1) (2022)
Meng Liu, Hong-Yu Ou, Yongqun He
ICEO: a Biological Ontology for Representing and Analyzing the Bacterial Integrative and Conjugative Element. ICBO (2019)
Meng Liu, Xiaobin Li, Yingzhou Xie, Dexi Bi, Jingyong Sun, Jun Li, Cui Tai, Zixin Deng, Hong-Yu Ou
ICEberg 2.0: an updated database of bacterial integrative and conjugative elements. Nucleic Acids Res. 47 (Database-Issue) (2019)
Meng Liu, Hong-Yu Ou, Yongqun He
OGG-Bac: Ontological Representation of Orthologous Bacterial Genes. ICBO (2019)
Jun Li, Cui Tai, Zixin Deng, Weihong Zhong, Yongqun He, Hong-Yu Ou
VRprofile: gene-cluster-detection-based profiling of virulence and antibiotic resistance traits encoded within genome sequences of pathogenic bacteria. Briefings Bioinform. 19 (4) (2018)
Yingzhou Xie, Yiqing Wei, Yue Shen, Xiaobin Li, Hao Zhou, Cui Tai, Zixin Deng, Hong-Yu Ou
TADB 2.0: an updated database of bacterial type II toxin-antitoxin loci. Nucleic Acids Res. 46 (Database-Issue) (2018)
Xiaobin Li, Yingzhou Xie, Meng Liu, Cui Tai, Jingyong Sun, Zixin Deng, Hong-Yu Ou
oriTfinder: a web-based tool for the identification of origin of transfers in DNA sequences of bacterial mobile genetic elements. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Dexi Bi, Linmeng Liu, Cui Tai, Zixin Deng, Kumar Rajakumar, Hong-Yu Ou
SecReT4: a web-based bacterial type IV secretion system resource. Nucleic Acids Res. 41 (Database-Issue) (2013)
Dexi Bi, Zhen Xu, Ewan M. Harrison, Cui Tai, Yiqing Wei, Xinyi He, Shiru Jia, Zixin Deng, Kumar Rajakumar, Hong-Yu Ou
ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. Nucleic Acids Res. 40 (Database-Issue) (2012)
Yucheng Shao, Ewan M. Harrison, Dexi Bi, Cui Tai, Xinyi He, Hong-Yu Ou, Kumar Rajakumar, Zixin Deng
TADB: a web-based resource for Type 2 toxin-antitoxin loci in bacteria and archaea. Nucleic Acids Res. 39 (Database-Issue) (2011)
Yucheng Shao, Xinyi He, Ewan M. Harrison, Cui Tai, Hong-Yu Ou, Kumar Rajakumar, Zixin Deng
subtractive hybridization analysis of multiple bacterial genomes. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Hong-Yu Ou, Xinyi He, Ewan M. Harrison, Bridget R. Kulasekara, Ali Bin Thani, Aras Kadioglu, Stephen Lory, Jay C. D. Hinton, Michael R. Barer, Zixin Deng, Kumar Rajakumar
and experimental discovery of bacterial genomic islands. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Ren Zhang, Hong-Yu Ou, Chun-Ting Zhang
EG: a database of essential genes. Nucleic Acids Res. 32 (Database-Issue) (2004)
Yonghong Wang, Hong-Yu Ou, Fengbiao Guo
Recognition of Translation Initiation Sites of Eukaryotic Genes Based on an EM Algorithm. J. Comput. Biol. 10 (5) (2003)
Chun-Ting Zhang, Ren Zhang, Hong-Yu Ou
The Z curve database: a graphic representation of genome sequences. Bioinform. 19 (5) (2003)