Herman J. C. Berendsen

Publication Activity (10 Years)

Years Active: 1987-2013
Publications (10 Years): 0

Top Topics

Information Technology

Parallel Implementations

Distributed Memory

Message Passing Interface

Top Venues

Publications

Nicolae Goga, Herman J. C. Berendsen, Svetlana Baoukina, Sunita Andreea Moga, G. Dragoi, Anton Hadar, B. Paviloiu
MPI Parallelization of Innovative DPD Thermostats. ICHI (2013)
Djurre H. De Jong, Lars V. Schäfer, Alex H. de Vries, Siewert J. Marrink, Herman J. C. Berendsen, Helmut Grubmüller
Determining equilibrium constants for dimerization reactions from molecular dynamics simulations. J. Comput. Chem. 32 (9) (2011)
David van der Spoel, Erik Lindahl, Berk Hess, Gerrit Groenhof, Alan E. Mark, Herman J. C. Berendsen
GROMACS: Fast, flexible, and free. J. Comput. Chem. 26 (16) (2005)
Marc F. Lensink, Janez Mavri, Herman J. C. Berendsen
Simulation of slow reaction with quantum character: Neutral hydrolysis of carboxylic ester. J. Comput. Chem. 20 (8) (1999)
K. Anton Feenstra, Berk Hess, Herman J. C. Berendsen
Improving efficiency of large time-scale molecular dynamics simulations of hydrogen-rich systems. J. Comput. Chem. 20 (8) (1999)
Daan M. F. van Aalten, Bert L. de Groot, John B. C. Findlay, Herman J. C. Berendsen, Andrea Amadei
A comparison of techniques for calculating protein essential dynamics. J. Comput. Chem. 18 (2) (1997)
Berk Hess, Henk Bekker, Herman J. C. Berendsen, Johannes G. E. M. Fraaije
LINCS: A linear constraint solver for molecular simulations. J. Comput. Chem. 18 (12) (1997)
Rudi van Drunen, Cees van Teylingen, Marcel Kroontje, Herman J. C. Berendsen
The Amfisbaena: A Parallel Sup computer System Based on i860 as a Generic Platform for Molecular Dynamics Simulation. PDPTA (1996)
Marc F. Lensink, Janez Mavri, Herman J. C. Berendsen
Simultaneous integration of mixed quantum-classical systems by density matrix evolution equations using interaction representation and adaptive time step integrator. J. Comput. Chem. 17 (11) (1996)
René C. van Schaik, Wilfred F. van Gunsteren, Herman J. C. Berendsen
Conformational search by potential energy annealing: Algorithm and application to cyclosporin A. J. Comput. Aided Mol. Des. 6 (2) (1992)
Herman J. C. Berendsen
Dynamic simulation as an essential tool in molecular modeling. J. Comput. Aided Mol. Des. 2 (3) (1988)
Wilfred F. van Gunsteren, Herman J. C. Berendsen
Thermodynamic cycle integration by computer simulation as a tool for obtaining free energy differences in molecular chemistry. J. Comput. Aided Mol. Des. 1 (2) (1987)