Heejoon Chae

Publication Activity (10 Years)

Years Active: 2010-2023
Publications (10 Years): 17

Top Topics

Hierarchical Clustering

Top Venues

Briefings Bioinform.

Publications

Joungmin Choi, Chaelin Park, Heejoon Chae
meth-SemiCancer: a cancer subtype classification framework via semi-supervised learning utilizing DNA methylation profiles. BMC Bioinform. 24 (1) (2023)
Joungmin Choi, Heejoon Chae
moBRCA-net: a breast cancer subtype classification framework based on multi-omics attention neural networks. BMC Bioinform. 24 (1) (2023)
Sungjoon Park, Dohoon Lee, Youngkuk Kim, Sangsoo Lim, Heejoon Chae, Sun Kim
BioVLAB-Cancer-Pharmacogenomics: tumor heterogeneity and pharmacogenomics analysis of multi-omics data from tumor on the cloud. Bioinform. 38 (1) (2021)
Hongryul Ahn, Inuk Jung, Heejoon Chae, Minsik Oh, Inyoung Kim, Sun Kim
IDEA: Integrating Divisive and Ensemble-Agglomerate hierarchical clustering framework for arbitrary shape data. IEEE BigData (2021)
Joungmin Choi, Je-Keun Rhee, Heejoon Chae
Cell Subtype Classification via Representation Learning Based on a Denoising Autoencoder for Single-Cell RNA Sequencing. IEEE Access 9 (2021)
Minsik Oh, Sungjoon Park, Sun Kim, Heejoon Chae
Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulations. Briefings Bioinform. 22 (1) (2021)
Inuk Jung, Joungmin Choi, Heejoon Chae
Correction to "A Non-Negative Matrix Factorization Based Framework for the Analysis of Multi-Class Time-Series Single-Cell RNA-Seq Data". IEEE Access 9 (2021)
Minsik Oh, Sungjoon Park, Sun Kim, Heejoon Chae
Erratum to: Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulations. Briefings Bioinform. 22 (1) (2021)
Inuk Jung, Joungmin Choi, Heejoon Chae
A Non-Negative Matrix Factorization-Based Framework for the Analysis of Multi-Class Time-Series Single-Cell RNA-Seq Data. IEEE Access 8 (2020)
Joungmin Choi, Heejoon Chae
methCancer-gen: a DNA methylome dataset generator for user-specified cancer type based on conditional variational autoencoder. BMC Bioinform. 21 (1) (2020)
Hongryul Ahn, Inuk Jung, Heejoon Chae, Dongwon Kang, Woosuk Jung, Sun Kim
HTRgene: a computational method to perform the integrated analysis of multiple heterogeneous time-series data: case analysis of cold and heat stress response signaling genes in Arabidopsis. BMC Bioinform. (16) (2019)
Joungmin Choi, Yoonjae Park, Sun Kim, Heejoon Chae
Cloud-BS: A MapReduce-based bisulfite sequencing aligner on cloud. J. Bioinform. Comput. Biol. 16 (6) (2018)
Hongryul Ahn, Inuk Jung, Heejoon Chae, Dongwon Kang, Woosuk Jung, Sun Kim
HTRgene: Integrating Multiple Heterogeneous Time-series Data to Investigate Cold and Heat Stress Response Signaling Genes in Arabidopsis. BIBM (2018)
Seokjun Soe, Yoonjae Park, Heejoon Chae
BiSpark: a Spark-based highly scalable aligner for bisulfite sequencing data. BMC Bioinform. 19 (1) (2018)
Hongryul Ahn, Heejoon Chae, Woosuk Jung, Sun Kim
Integration of heterogeneous time series gene expression data by clustering on time dimension. BigComp (2017)
Heejoon Chae, Sangseon Lee, Kenneth P. Nephew, Sun Kim
Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines. BMC Syst. Biol. 10 (4) (2016)
Heejoon Chae, SungMin Rhee, Kenneth P. Nephew, Sun Kim
BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput sequencing data. Bioinform. 31 (2) (2015)
Heejoon Chae, Inuk Jung, Hyungro Lee, Suresh Marru, Seong-Whan Lee, Sun Kim
Bio and health informatics meets cloud : BioVLab as an example. Health Inf. Sci. Syst. 1 (1) (2013)
Jaehyun An, Kwangsoo Kim, SungMin Rhee, Heejoon Chae, Kenneth P. Nephew, Sun Kim
Genome-Wide Analysis and Modeling of DNA methylation susceptibility in 30 Breast Cancer Cell Lines by using CPG Flanking Sequences. J. Bioinform. Comput. Biol. 11 (3) (2013)
Hyungro Lee, Youngik Yang, Heejoon Chae, Seungyoon Nam, Donghoon Choi, Patanachai Tangchaisin, Chathura Herath, Suresh Marru, Kenneth P. Nephew, Sun Kim
BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated Analysis. BIBM (2011)
Suresh Marru, Heejoon Chae, Patanachai Tangchaisin, Sun Kim, Marlon E. Pierce, Kenneth P. Nephew
Transitioning BioVLab cloud workbench to a science gateway. TG (2011)
Heejoon Chae, Kwangmin Choi, Sun Kim, Haleh Ashki
EGGSlicer: predicting biologically meaningful gene sets from gene clusters using gene ontology information. BCB (2010)