Hamid R. Tizhoosh

ORCID

Publication Activity (10 Years)

Years Active: 1997-2024
Publications (10 Years): 180

Top Venues

Otto-von-Guericke University Magdeburg, Germany (PHD)

Education History

Otto-von-Guericke University Magdeburg, Germany

PHD

Publications

Hamid R. Tizhoosh, Liron Pantanowitz
On Image Search in Histopathology. CoRR (2024)
Ehsan Rokhsatyazdi, Shahryar Rahnamayan, Sevil Zanjani Miyandoab, Azam Asilian Bidgoli, Hamid R. Tizhoosh
Training Artificial Neural Networks by Coordinate Search Algorithm. CoRR (2024)
Areej Alsaafin, Peyman Nejat, Abubakr Shafique, Jibran A. Khan, Saghir Alfasly, Ghazal Alabtah, Hamid R. Tizhoosh
SPLICE - Streamlining Digital Pathology Image Processing. CoRR (2024)
Isaiah Lahr, Saghir Alfasly, Peyman Nejat, Jibran A. Khan, Luke Kottom, Vaishnavi Kumbhar, Areej Alsaafin, Abubakr Shafique, Sobhan Hemati, Ghazal Alabtah, Nneka I. Comfere, Dennis Murphree, Aaron Mangold, Saba Yasir, Chady Meroueh, Lisa Boardman, Vijay H. Shah, Joaquin J. Garcia, Hamid R. Tizhoosh
Analysis and Validation of Image Search Engines in Histopathology. CoRR (2024)
Hamid R. Tizhoosh
Foundation Models and Information Retrieval in Digital Pathology. CoRR (2024)
Davood Zaman Farsa, Shahryar Rahnamayan, Azam Asilian Bidgoli, Hamid R. Tizhoosh
Evolutionary multi-objective design of autoencoders for compact representation of histopathology whole slide images. Comput. Oper. Res. 162 (2024)
Sobhan Hemati, Shivam Kalra, Morteza Babaie, Hamid R. Tizhoosh
Learning binary and sparse permutation-invariant representations for fast and memory efficient whole slide image search. Comput. Biol. Medicine 162 (2023)
Youqing Mu, Hamid R. Tizhoosh, Taher Dehkharghanian, Clinton J. V. Campbell
Whole slide image representation in bone marrow cytology. Comput. Biol. Medicine 166 (2023)
Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, Adrian Batten, Soma Sikdar, Hamid R. Tizhoosh
Composite Biomarker Image for Advanced Visualization in Histopathology. EMBC (2023)
Milad Sikaroudi, Seyedeh Maryam Hosseini, Shahryar Rahnamayan, Hamid R. Tizhoosh
ALFA - Leveraging All Levels of Feature Abstraction for Enhancing the Generalization of Histopathology Image Classification Across Unseen Hospitals. ICCV (Workshops) (2023)
Milad Sikaroudi, Seyedeh Maryam Hosseini, Shahryar Rahnamayan, Hamid R. Tizhoosh
ALFA - Leveraging All Levels of Feature Abstraction for Enhancing the Generalization of Histopathology Image Classification Across Unseen Hospitals. CoRR (2023)
Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, Hamid R. Tizhoosh
Immunohistochemistry Biomarkers-Guided Image Search for Histopathology. CoRR (2023)
Milad Sikaroudi, Mehdi Afshari, Abubakr Shafique, Shivam Kalra, Hamid R. Tizhoosh
Comments on 'Fast and scalable search of whole-slide images via self-supervised deep learning'. CoRR (2023)
Saghir Alfasly, Abubakr Shafique, Peyman Nejat, Jibran A. Khan, Areej Alsaafin, Ghazal Alabtah, Hamid R. Tizhoosh
Rotation-Agnostic Image Representation Learning for Digital Pathology. CoRR (2023)
Abubakr Shafique, Ricardo Gonzalez, Liron Pantanowitz, Puay Hoon Tan, Alberto Machado, Ian A Cree, Hamid R. Tizhoosh
A Preliminary Investigation into Search and Matching for Tumour Discrimination in WHO Breast Taxonomy Using Deep Networks. CoRR (2023)
Seyedeh Maryam Hosseini, Abubakr Shafique, Morteza Babaie, Hamid R. Tizhoosh
Class-imbalanced Unsupervised and Semi-Supervised Domain Adaptation for Histopathology Images. EMBC (2023)
Pooria Mazaheri, Azam Asilian Bidgoli, Shahryar Rahnamayan, Hamid R. Tizhoosh
Ranking Loss and Sequestering Learning for Reducing Image Search Bias in Histopathology. CoRR (2023)
Abubakr Shafique, Saghir Alfasly, Areej Alsaafin, Peyman Nejat, Jibran A. Khan, Hamid R. Tizhoosh
Selection of Distinct Morphologies to Divide & Conquer Gigapixel Pathology Images. CoRR (2023)
Kimia Hemmatirad, Morteza Babaie, Jeffrey Hodgin, Liron Pantanowitz, Hamid R. Tizhoosh
An Investigation into Glomeruli Detection in Kidney H&E and PAS Images using YOLO. CoRR (2023)
Saghir Alfasly, Peyman Nejat, Sobhan Hemati, Jibran A. Khan, Isaiah Lahr, Areej Alsaafin, Abubakr Shafique, Nneka I. Comfere, Dennis Murphree, Chady Meroueh, Saba Yasir, Aaron Mangold, Lisa Boardman, Vijay Shah, Joaquin J. Garcia, Hamid R. Tizhoosh
When is a Foundation Model a Foundation Model. CoRR (2023)
Peyman Nejat, Areej Alsaafin, Ghazal Alabtah, Nneka I. Comfere, Aaron Mangold, Dennis Murphree, Patricija Zot, Saba Yasir, Joaquin J. Garcia, Hamid R. Tizhoosh
Creating an Atlas of Normal Tissue for Pruning WSI Patching Through Anomaly Detection. CoRR (2023)
Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, Adrian Batten, Soma Sikdar, Hamid R. Tizhoosh
Composite Biomarker Image for Advanced Visualization in Histopathology. CoRR (2023)
Ehsan Rokhsatyazdi, Shahryar Rahnamayan, Sevil Zanjani Miyandoab, Azam Asilian Bidgoli, Hamid R. Tizhoosh
Training Artificial Neural Networks by Coordinate Search Algorithm. SSCI (2023)
Abubakr Shafique, Morteza Babaie, Ricardo Gonzalez, Hamid R. Tizhoosh
Immunohistochemistry Biomarkers-Guided Image Search for Histopathology. EMBC (2023)
Seyedeh Maryam Hosseini, Milad Sikaroudi, Morteza Babaie, Hamid R. Tizhoosh
Proportionally Fair Hospital Collaborations in Federated Learning of Histopathology Images. IEEE Trans. Medical Imaging 42 (7) (2023)
Azam Asilian Bidgoli, Shahryar Rahnamayan, Taher Dehkharghanian, Abtin Riasatian, Hamid R. Tizhoosh
Evolutionary Computation in Action: Hyperdimensional Deep Embedding Spaces of Gigapixel Pathology Images. IEEE Trans. Evol. Comput. 27 (1) (2023)
Pooria Mazaheri, Azam Asilian Bidgoli, Shahryar Rahnamayan, Hamid R. Tizhoosh
Ranking loss and sequestering learning for reducing image search bias in histopathology. Appl. Soft Comput. 142 (2023)
Azam Asilian Bidgoli, Shahryar Rahnamayan, Taher Dehkharghanian, Abtin Riasatian, Hamid R. Tizhoosh
Evolutionary Computation in Action: Hyperdimensional Deep Embedding Spaces of Gigapixel Pathology Images. CoRR (2023)
Sobhan Hemati, Mohammad Hadi Mehdizavareh, Shoja'eddin Chenouri, Hamid R. Tizhoosh
A non-alternating graph hashing algorithm for large-scale image search. Comput. Vis. Image Underst. 219 (2022)
Milad Sikaroudi, Shahryar Rahnamayan, Hamid R. Tizhoosh
Hospital-Agnostic Image Representation Learning in Digital Pathology. CoRR (2022)
Seyedeh Maryam Hosseini, Milad Sikaroudi, Morteza Babaie, Hamid R. Tizhoosh
Cluster Based Secure Multi-Party Computation in Federated Learning for Histopathology Images. CoRR (2022)
Sobhan Hemati, Hamid R. Tizhoosh
Beyond neighbourhood-preserving transformations for quantization-based unsupervised hashing. Pattern Recognit. Lett. 153 (2022)
Danial Maleki, Hamid R. Tizhoosh
LILE: Look In-Depth before Looking Elsewhere - A Dual Attention Network using Transformers for Cross-Modal Information Retrieval in Histopathology Archives. MIDL (2022)
Sobhan Hemati, Shivam Kalra, Morteza Babaie, Hamid R. Tizhoosh
Learning Binary and Sparse Permutation-Invariant Representations for Fast and Memory Efficient Whole Slide Image Search. CoRR (2022)
Amir Safarpoor, Jason D. Hipp, Hamid R. Tizhoosh
Learning to Predict RNA Sequence Expressions from Whole Slide Images with Applications for Search and Classification. CoRR (2022)
Seyedeh Maryam Hosseini, Milad Sikaroudi, Morteza Babaie, Hamid R. Tizhoosh
Cluster Based Secure Multi-party Computation in Federated Learning for Histopathology Images. DeCaF/FAIR@MICCAI (2022)
Maral Rasoolijaberi, Morteza Babaie, Abtin Riasatian, Sobhan Hemati, Parsa Ashrafi, Ricardo Gonzalez, Hamid R. Tizhoosh
Multi-Magnification Image Search in Digital Pathology. IEEE J. Biomed. Health Informatics 26 (9) (2022)
Milad Sikaroudi, Shahryar Rahnamayan, Hamid R. Tizhoosh
Hospital-Agnostic Image Representation Learning in Digital Pathology. EMBC (2022)
Azam Asilian Bidgoli, Shahryar Rahnamayan, Taher Dehkharghanian, Abtin Riasatian, Shivam Kalra, Manit Zaveri, Clinton J. V. Campbell, Anil Parwani, Liron Pantanowitz, Hamid R. Tizhoosh
Evolutionary deep feature selection for compact representation of gigapixel images in digital pathology. Artif. Intell. Medicine 132 (2022)
Kimia Hemmatirad, Morteza Babaie, Mehdi Afshari, Danial Maleki, Mahjabin Saiadi, Hamid R. Tizhoosh
Quality Control of Whole Slide Images using the YOLO Concept. ICHI (2022)
Danial Maleki, Hamid R. Tizhoosh
LILE: Look In-Depth before Looking Elsewhere - A Dual Attention Network using Transformers for Cross-Modal Information Retrieval in Histopathology Archives. CoRR (2022)
Mohammed Adnan, Yani A. Ioannou, Chuan-Yung Tsai, Angus Galloway, Hamid R. Tizhoosh, Graham W. Taylor
Monitoring Shortcut Learning using Mutual Information. CoRR (2022)
Shivam Kalra, Junfeng Wen, Jesse C. Cresswell, Maksims Volkovs, Hamid R. Tizhoosh
ProxyFL: Decentralized Federated Learning through Proxy Model Sharing. CoRR (2021)
Rohollah Moosavi Tayebi, Youqing Mu, Taher Dehkharghanian, Catherine Ross, Monalisa Sur, Ronan Foley, Hamid R. Tizhoosh, Clinton J. V. Campbell
Histogram of Cell Types: Deep Learning for Automated Bone Marrow Cytology. CoRR (2021)
Milad Sikaroudi, Benyamin Ghojogh, Fakhri Karray, Mark Crowley, Hamid R. Tizhoosh
Magnification Generalization for Histopathology Image Embedding. CoRR (2021)
Mehdi Afshari, Hamid R. Tizhoosh
A Similarity Measure of Histopathology Images by Deep Embeddings. CoRR (2021)
S. Maryam Hosseini, Morteza Babaie, Hamid R. Tizhoosh
Learning Similarity via Subjective Evaluations and Deep Features of Histopathology Images. BIBE (2021)
Mehdi Afshari, Hamid R. Tizhoosh
A Similarity Measure of Histopathology Images by Deep Embeddings. EMBC (2021)
Abubakr Shafique, Morteza Babaie, Mahjabin Sajadi, Adrian Batten, Soma Skdar, Hamid R. Tizhoosh
Automatic Multi-Stain Registration of Whole Slide Images in Histopathology. EMBC (2021)
Abtin Riasatian, Morteza Babaie, Danial Maleki, Shivam Kalra, Mojtaba Valipour, Sobhan Hemati, Manit Zaveri, Amir Safarpoor, Sobhan Shafiei, Mehdi Afshari, Maral Rasoolijaberi, Milad Sikaroudi, Mohd Adnan, Sultaan Shah, Charles Choi, Savvas Damaskinos, Clinton J. V. Campbell, Phedias Diamandis, Liron Pantanowitz, Hany Kashani, Ali Ghodsi, Hamid R. Tizhoosh
Fine-Tuning and training of densenet for histopathology image representation using TCGA diagnostic slides. Medical Image Anal. 70 (2021)
Aishwarya Krishna Allada, Yuanxin Wang, Veni Jindal, Morteza Babee, Hamid R. Tizhoosh, Mark Crowley
Analysis of Language Embeddings for Classification of Unstructured Pathology Reports. EMBC (2021)
Sobhan Hemati, Mohammad Hadi Mehdizavareh, Morteza Babaie, Shivam Kalra, Hamid R. Tizhoosh
A Simple Supervised Hashing Algorithm Using Projected Gradient and Oppositional Weights. ICIP (2021)
Sobhan Hemati, Shivam Kalra, Cameron Meaney, Morteza Babaie, Ali Ghodsi, Hamid R. Tizhoosh
CNN and Deep Sets for End-to-End Whole Slide Image Representation Learning. MIDL (2021)
Sobhan Shafiei, Morteza Babaie, Shivam Kalra, Hamid R. Tizhoosh
Colored Kimia Path24 Dataset: Configurations and Benchmarks with Deep Embeddings. CoRR (2021)
Shivam Kalra, Mohammed Adnan, Sobhan Hemati, Taher Dehkharghanian, Shahryar Rahnamayan, Hamid R. Tizhoosh
Pay Attention with Focus: A Novel Learning Scheme for Classification of Whole Slide Images. MICCAI (8) (2021)
Antonio Sze-To, Abtin Riasatian, Hamid R. Tizhoosh
Searching for Pneumothorax in X-Ray Images Using Autoencoded Deep Features. CoRR (2021)
Sobhan Hemati, Hamid R. Tizhoosh
Beyond Neighbourhood-Preserving Transformations for Quantization-Based Unsupervised Hashing. CoRR (2021)
Milad Sikaroudi, Benyamin Ghojogh, Fakhri Karray, Mark Crowley, Hamid R. Tizhoosh
Magnification Generalization For Histopathology Image Embedding. ISBI (2021)
Nitish Bhatt, David Ramon Prados, Nedim Hodzic, Christos Karanassios, Hamid R. Tizhoosh
Unsupervised Detection of Lung Nodules in Chest Radiography Using Generative Adversarial Networks. CoRR (2021)
Shalev Lifshitz, Abtin Riasatian, Hamid R. Tizhoosh
Gram Barcodes for Histopathology Tissue Texture Retrieval. CoRR (2021)
Nitish Bhatt, David Ramon Prados, Nedim Hodzic, Christos Karanassios, Hamid R. Tizhoosh
Unsupervised Detection of Lung Nodules in Chest Radiography Using Generative Adversarial Networks. EMBC (2021)
Abubakr Shafique, Morteza Babaie, Mahjabin Sajadi, Adrian Batten, Soma Skdar, Hamid R. Tizhoosh
Automatic Multi-Stain Registration of Whole Slide Images in Histopathology. CoRR (2021)
Shivam Kalra, Mohammed Adnan, Sobhan Hemati, Taher Dehkharghanian, Shahryar Rahnamayan, Hamid R. Tizhoosh
Pay Attention with Focus: A Novel Learning Scheme for Classification of Whole Slide Images. CoRR (2021)
Morteza Babaie, Hany Kashani, Meghana Dinesh Kumar, Hamid R. Tizhoosh
A new Local Radon Descriptor for Content-Based Image Search. CoRR (2020)
Benyamin Ghojogh, Milad Sikaroudi, Sobhan Shafiei, Hamid R. Tizhoosh, Fakhri Karray, Mark Crowley
Fisher Discriminant Triplet and Contrastive Losses for Training Siamese Networks. CoRR (2020)
Antonio Sze-To, Hamid R. Tizhoosh
Searching for Pneumothorax in Half a Million Chest X-Ray Images. CoRR (2020)
Sobhan Shafiei, Amir Safarpoor, Ahad Jamalizadeh, Hamid R. Tizhoosh
Class-Agnostic Weighted Normalization of Staining in Histopathology Images Using a Spatially Constrained Mixture Model. IEEE Trans. Medical Imaging 39 (11) (2020)
Mohammed Adnan, Shivam Kalra, Hamid R. Tizhoosh
Representation Learning of Histopathology Images using Graph Neural Networks. CoRR (2020)
Abdullah Irfan, Akash L. Adivishnu, Antonio Sze-To, Taher Dehkharghanian, Shahryar Rahnamayan, Hamid R. Tizhoosh
Classifying Pneumonia among Chest X-Rays Using Transfer Learning. EMBC (2020)
Antonio Sze-To, Hamid R. Tizhoosh
Searching for Pneumothorax in Half a Million Chest X-Ray Images. AIME (2020)
Milad Sikaroudi, Benyamin Ghojogh, Amir Safarpoor, Fakhri Karray, Mark Crowley, Hamid R. Tizhoosh
Offline Versus Online Triplet Mining Based on Extreme Distances of Histopathology Patches. ISVC (1) (2020)
Shivam Kalra, Mohammed Adnan, Graham W. Taylor, Hamid R. Tizhoosh
Learning Permutation Invariant Representations Using Memory Networks. ECCV (29) (2020)
Aditya Sriram, Shivam Kalra, Morteza Babaie, Brady Kieffer, Waddah Al Drobi, Shahryar Rahnamayan, Hany Kashani, Hamid R. Tizhoosh
Forming Local Intersections of Projections for Classifying and Searching Histopathology Images. CoRR (2020)
Taher Dehkharghanian, Shahryar Rahnamayan, Hamid R. Tizhoosh
Evaluating the Predictability of Cancer Types from 536 Somatic Mutations: A New Dataset. EMBC (2020)
Mohammed Adnan, Shivam Kalra, Hamid R. Tizhoosh
Representation Learning of Histopathology Images using Graph Neural Networks. CVPR Workshops (2020)
Shivam Kalra, Hamid R. Tizhoosh, Sultaan Shah, Charles Choi, Savvas Damaskinos, Amir Safarpoor, Sobhan Shafiei, Morteza Babaie, Phedias Diamandis, Clinton J. V. Campbell, Liron Pantanowitz
Pan-cancer diagnostic consensus through searching archival histopathology images using artificial intelligence. npj Digit. Medicine 3 (2020)
Alison K. Cheeseman, Hamid R. Tizhoosh, Edward R. Vrscay
Studying the Effect of Digital Stain Separation of Histopathology Images on Image Search Performance. ICIAR (2) (2020)
Morteza Babaie, Hany Kashani, Meghana Dinesh Kumar, Hamid R. Tizhoosh
A New Local Radon Descriptor for Content-Based Image Search. AIME (2020)
Manit Zaveri, Shivam Kalra, Morteza Babaie, Sultaan Shah, Savvas Damaskinos, Hany Kashani, Hamid R. Tizhoosh
Recognizing Magnification Levels in Microscopic Snapshots. CoRR (2020)
Manit Zaveri, Shivam Kalra, Morteza Babaie, Sultaan Shah, Savvas Damaskinos, Hany Kashani, Hamid R. Tizhoosh
Recognizing Magnification Levels in Microscopic Snapshots. EMBC (2020)
Danial Maleki, Mehdi Afshari, Morteza Babaie, Hamid R. Tizhoosh
Ink Marker Segmentation in Histopathology Images Using Deep Learning. ISVC (1) (2020)
Milad Sikaroudi, Benyamin Ghojogh, Fakhri Karray, Mark Crowley, Hamid R. Tizhoosh
Batch-Incremental Triplet Sampling for Training Triplet Networks Using Bayesian Updating Theorem. ICPR (2020)
Abtin Riasatian, Maral Rasoolijaberi, Morteza Babaie, Hamid R. Tizhoosh
A Comparative Study of U-Net Topologies for Background Removal in Histopathology Images. IJCNN (2020)
Benyamin Ghojogh, Milad Sikaroudi, Hamid R. Tizhoosh, Fakhri Karray, Mark Crowley
Weighted Fisher Discriminant Analysis in the Input and Feature Spaces. ICIAR (2) (2020)
Milad Sikaroudi, Amir Safarpoor, Benyamin Ghojogh, Sobhan Shafiei, Mark Crowley, Hamid R. Tizhoosh
Supervision and Source Domain Impact on Representation Learning: A Histopathology Case Study. CoRR (2020)
Milad Sikaroudi, Benyamin Ghojogh, Amir Safarpoor, Fakhri Karray, Mark Crowley, Hamid R. Tizhoosh
Offline versus Online Triplet Mining based on Extreme Distances of Histopathology Patches. CoRR (2020)
Danial Maleki, Mehdi Afshari, Morteza Babaie, Hamid R. Tizhoosh
Ink Marker Segmentation in Histopathology Images Using Deep Learning. CoRR (2020)
Shivam Kalra, Hamid R. Tizhoosh, Charles Choi, Sultaan Shah, Phedias Diamandis, Clinton J. V. Campbell, Liron Pantanowitz
- An Image Search Engine for Large Archives of Histopathology Whole Slide Images. Medical Image Anal. 65 (2020)
Benyamin Ghojogh, Milad Sikaroudi, Hamid R. Tizhoosh, Fakhri Karray, Mark Crowley
Weighted Fisher Discriminant Analysis in the Input and Feature Spaces. CoRR (2020)
Arash Ebrahimian, Hossein Mohammadi, Morteza Babaie, Nima Maftoon, Hamid R. Tizhoosh
Class-Aware Image Search for Interpretable Cancer Identification. IEEE Access 8 (2020)
Sobhan Hemati, Mohammad Hadi Mehdizavareh, Shoja'eddin Chenouri, Hamid R. Tizhoosh
A non-alternating graph hashing algorithm for large scale image search. CoRR (2020)
Milad Sikaroudi, Amir Safarpoor, Benyamin Ghojogh, Sobhan Shafiei, Mark Crowley, Hamid R. Tizhoosh
Supervision and Source Domain Impact on Representation Learning: A Histopathology Case Study. EMBC (2020)
Benyamin Ghojogh, Milad Sikaroudi, Sobhan Shafiei, Hamid R. Tizhoosh, Fakhri Karray, Mark Crowley
Fisher Discriminant Triplet and Contrastive Losses for Training Siamese Networks. IJCNN (2020)
Milad Sikaroudi, Benyamin Ghojogh, Fakhri Karray, Mark Crowley, Hamid R. Tizhoosh
Batch-Incremental Triplet Sampling for Training Triplet Networks Using Bayesian Updating Theorem. CoRR (2020)
Manit Zaveri, Sobhan Hemati, Sultaan Shah, Savvas Damaskinos, Hamid R. Tizhoosh
Kimia-5MAG - A Dataset for Learning the Magnification in Histopathology Images. ICTAI (2020)
Abtin Riasatian, Maral Rasoolijaberi, Morteza Babaie, Hamid R. Tizhoosh
A Comparative Study of U-Net Topologies for Background Removal in Histopathology Images. CoRR (2020)
Aditya Sriram, Shivam Kalra, Morteza Babaie, Brady Kieffer, Waddah Al Drobi, Shahryar Rahnamayan, Hany Kashani, Hamid R. Tizhoosh
Forming Local Intersections of Projections for Classifying and Searching Histopathology Images. AIME (2020)
Sara Ross-Howe, Hamid R. Tizhoosh
Atrial Fibrillation Detection Using Deep Features and Convolutional Networks. CoRR (2019)
Shivam Kalra, Charles Choi, Sultaan Shah, Liron Pantanowitz, Hamid R. Tizhoosh
Yottixel - An Image Search Engine for Large Archives of Histopathology Whole Slide Images. CoRR (2019)
Hamid R. Tizhoosh, Shivam Kalra, Shalev Lifshitz, Morteza Babaie
Subtractive Perceptrons for Learning Images: A Preliminary Report. CoRR (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Hamid R. Tizhoosh