Ferhat Ay

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 4

Top Topics

Community Detection

Comparative Genomics

Top Venues

Publications

Ali Osman Berk Sapci, Shan Lu, Shuchen Yan, Ferhat Ay, Öznur Tastan, Sündüz Keles
MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing. Bioinform. 39 (10) (2023)
Abhijit Chakraborty, Ferhat Ay, Ramana V. Davuluri
ExTraMapper: exon- and transcript-level mappings for orthologous gene pairs. Bioinform. 37 (20) (2021)
Abbas Roayaei Ardakany, Ferhat Ay, Stefano Lonardi
Selfish: discovery of differential chromatin interactions via a self-similarity measure. Bioinform. 35 (14) (2019)
Abhijit Chakraborty, Ferhat Ay
Identification of copy number variations and translocations in cancer cells from Hi-C data. Bioinform. 34 (2) (2018)
Nelle Varoquaux, Ferhat Ay, William Stafford Noble, Jean-Philippe Vert
A statistical approach for inferring the 3D structure of the genome. Bioinform. 30 (12) (2014)
Ferhat Ay, Michael Dang, Tamer Kahveci
Metabolic network alignment in large scale by network compression. BMC Bioinform. 13 (S-3) (2012)
Michael Dang, Ferhat Ay, Tamer Kahveci
A novel framework for large scale metabolic network alignments by compression. BCB (2011)
Ferhat Ay, Manolis Kellis, Tamer Kahveci
SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings. J. Comput. Biol. 18 (3) (2011)
Ferhat Ay, Tamer Kahveci
SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings. RECOMB (2010)
Ferhat Ay, Günhan Gülsoy, Tamer Kahveci
Finding steady states of large scale regulatory networks through partitioning. GENSiPS (2010)
Ferhat Ay, Tamer Kahveci
Functional similarities of reaction sets in metabolic pathways. BCB (2010)
Ferhat Ay, Thang N. Dinh, My T. Thai, Tamer Kahveci
Finding Dynamic Modules of Biological Regulatory Networks. BIBE (2010)
Ferhat Ay, Tamer Kahveci, Valérie de Crécy-Lagard
A Fast and Accurate Algorithm for Comparative Analysis of metabolic Pathways. J. Bioinform. Comput. Biol. 7 (3) (2009)