Feng Ding

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 12

Top Topics

Protein Folding

Molecular Dynamics

Benchmark Suite

Temporal Expressions

Top Venues

J. Chem. Inf. Model.

Briefings Bioinform.

Publications

Xinjie Fan, Xiaohan Zhang, Jiajia Yan, Huan Xu, Wenhui Zhao, Feng Ding, Fengjuan Huang, Yunxiang Sun
Computational Investigation of Coaggregation and Cross-Seeding between Aβ and hIAPP Underpinning the Cross-Talk in Alzheimer's Disease and Type 2 Diabetes. J. Chem. Inf. Model. 64 (13) (2024)
Fengjuan Huang, Xinjie Fan, Ying Wang, Yu Zou, Jiangfang Lian, Chuang Wang, Feng Ding, Yunxiang Sun
: implications for age-related vascular risk factors in Alzheimer's disease. Briefings Bioinform. 25 (2) (2024)
Fengjuan Huang, Jiahui Huang, Jiajia Yan, Yuying Liu, Jiangfang Lian, Qinxue Sun, Feng Ding, Yunxiang Sun
Molecular Insights into the Effects of F16L and F19L Substitutions on the Conformation and Aggregation Dynamics of Human Calcitonin. J. Chem. Inf. Model. 64 (11) (2024)
Ying Wang, Jia Xu, Fengjuan Huang, Jiajia Yan, Xinjie Fan, Yu Zou, Chuang Wang, Feng Ding, Yunxiang Sun
SEVI Inhibits Aβ Amyloid Aggregation by Capping the β-Sheet Elongation Edges. J. Chem. Inf. Model. 63 (11) (2023)
Fengjuan Huang, Xinjie Fan, Ying Wang, Chuang Wang, Yu Zou, Jiangfang Lian, Feng Ding, Yunxiang Sun
Unveiling Medin Folding and Dimerization Dynamics and Conformations via Atomistic Discrete Molecular Dynamics Simulations. J. Chem. Inf. Model. 63 (20) (2023)
Gangtong Huang, Huayuan Tang, Yuying Liu, Chi Zhang, Pu Chun Ke, Yunxiang Sun, Feng Ding
Reveals the Mechanisms for Morphological Dependence and Asymmetry of Fibril Growth. J. Chem. Inf. Model. 63 (18) (2023)
Yuying Liu, Ying Wang, Yu Zhang, Yu Zou, Guanghong Wei, Feng Ding, Yunxiang Sun
Structural Perturbation of Monomers Determines the Amyloid Aggregation Propensity of Calcitonin Variants. J. Chem. Inf. Model. 63 (1) (2023)
Fengjuan Huang, Ying Wang, Yu Zhang, Chuang Wang, Jiangfang Lian, Feng Ding, Yunxiang Sun
Dissecting the Self-assembly Dynamics of Imperfect Repeats in α-Synuclein. J. Chem. Inf. Model. 63 (11) (2023)
Huayuan Tang, Yunxiang Sun, Feng Ding
Hydrophobic/Hydrophilic Ratio of Amphiphilic Helix Mimetics Determines the Effects on Islet Amyloid Polypeptide Aggregation. J. Chem. Inf. Model. 62 (7) (2022)
Yunxiang Sun, Junchao Huang, Xiangmei Duan, Feng Ding
Direct Observation of β-Barrel Intermediates in the Self-Assembly of Toxic SOD128-38 and Absence in Nontoxic Glycine Mutants. J. Chem. Inf. Model. 61 (2) (2021)
Huan He, Yuying Liu, Yunxiang Sun, Feng Ding
Misfolding and Self-Assembly Dynamics of Microtubule-Binding Repeats of the Alzheimer-Related Protein Tau. J. Chem. Inf. Model. 61 (6) (2021)
Praveen Nedumpully-Govindan, Domen B. Jemec, Feng Ding
CSAR Benchmark of Flexible MedusaDock in Affinity Prediction and Nativelike Binding Pose Selection. J. Chem. Inf. Model. 56 (6) (2016)
Praveen Nedumpully-Govindan, Lin Li, Emil Alexov, Mark A. Blenner, Feng Ding
Structural and energetic determinants of tyrosylprotein sulfotransferase sulfation specificity. Bioinform. 30 (16) (2014)
Feng Ding, Nikolay V. Dokholyan
Incorporating Backbone Flexibility in MedusaDock Improves Ligand-Binding Pose Prediction in the CSAR2011 Docking Benchmark. J. Chem. Inf. Model. 53 (8) (2013)
Denis Fourches, Eugene N. Muratov, Feng Ding, Nikolay V. Dokholyan, Alexander Tropsha
Predicting Binding Affinity of CSAR Ligands Using Both Structure-Based and Ligand-Based Approaches. J. Chem. Inf. Model. 53 (8) (2013)
Pradeep Kota, Feng Ding, Srinivas Ramachandran, Nikolay V. Dokholyan
Gaia: automated quality assessment of protein structure models. Bioinform. 27 (16) (2011)
Vinal V. Lakhani, Feng Ding, Nikolay V. Dokholyan
Polyglutamine Induced Misfolding of Huntingtin Exon1 is Modulated by the Flanking Sequences. PLoS Comput. Biol. 6 (4) (2010)
Feng Ding, Shuangye Yin, Nikolay V. Dokholyan
Rapid Flexible Docking Using a Stochastic Rotamer Library of Ligands. J. Chem. Inf. Model. 50 (9) (2010)
Shantanu Sharma, Feng Ding, Nikolay V. Dokholyan
iFoldRNA: three-dimensional RNA structure prediction and folding. Bioinform. 24 (17) (2008)
Denise G. Teotico, Monica L. Frazier, Feng Ding, Nikolay V. Dokholyan, Brenda R. S. Temple, Matthew R. Redinbo
Active Nuclear Receptors Exhibit Highly Correlated AF-2 Domain Motions. PLoS Comput. Biol. 4 (7) (2008)
Shantanu Sharma, Feng Ding, Huifen Nie, Daniel Watson, Aditya Unnithan, Jameson Lopp, Diane Pozefsky, Nikolay V. Dokholyan
iFold: a platform for interactive folding simulations of proteins. Bioinform. 22 (21) (2006)
Feng Ding, Nikolay V. Dokholyan
Correction: Emergence of Protein Fold Families through Rational Design. PLoS Comput. Biol. 2 (10) (2006)
Feng Ding, Nikolay V. Dokholyan
Emergence of Protein Fold Families through Rational Design. PLoS Comput. Biol. 2 (7) (2006)
Sagar D. Khare, Feng Ding, Kenneth N. Gwanmesia, Nikolay V. Dokholyan
Molecular Origin of Polyglutamine Aggregation in Neurodegenerative Diseases. PLoS Comput. Biol. 1 (3) (2005)