Dong-Yup Lee

Publication Activity (10 Years)

Years Active: 2003-2018
Publications (10 Years): 2

Top Topics

Intelligent Decision Making

Computational Framework

Protein Structure

Top Venues

BMC Syst. Biol.

Briefings Bioinform.

J. Bioinform. Comput. Biol.

Publications

Pranjul Mishra, Na-Rae Lee, Meiyappan Lakshmanan, Minsuk Kim, Byung-Gee Kim, Dong-Yup Lee
Genome-scale model-driven strain design for dicarboxylic acid production in Yarrowia lipolytica. BMC Syst. Biol. 12 (S-2) (2018)
Minsuk Kim, Gwanggyu Sun, Dong-Yup Lee, Byung-Gee Kim
BeReTa: a systematic method for identifying target transcriptional regulators to enhance microbial production of chemicals. Bioinform. 33 (1) (2017)
Meiyappan Lakshmanan, Tae Yong Kim, Bevan Kai-Sheng Chung, Sang Yup Lee, Dong-Yup Lee
Flux-sum analysis identifies metabolite targets for strain improvement. BMC Syst. Biol. 9 (2015)
Chengcheng Liu, Ju Xin Chin, Dong-Yup Lee
SynLinker: an integrated system for designing linkers and synthetic fusion proteins. Bioinform. 31 (22) (2015)
Ju Xin Chin, Bevan Kai-Sheng Chung, Dong-Yup Lee
Codon Optimization OnLine (COOL): a web-based multi-objective optimization platform for synthetic gene design. Bioinform. 30 (15) (2014)
Meiyappan Lakshmanan, Geoffrey Koh, Bevan Chung, Dong-Yup Lee
Software applications for flux balance analysis. Briefings Bioinform. 15 (1) (2014)
Meiyappan Lakshmanan, Bevan Kai-Sheng Chung, Chengcheng Liu, Seon-Won Kim, Dong-Yup Lee
Cofactor Modification Analysis: a Computational Framework to Identify cofactor specificity Engineering targets for strain Improvement. J. Bioinform. Comput. Biol. 11 (6) (2013)
Bevan Chung, Dong-Yup Lee
Computational codon optimization of synthetic gene for protein expression. BMC Syst. Biol. 6 (2012)
Geoffrey Koh, Dong-Yup Lee
Mathematical modeling and sensitivity analysis of the integrated TNFα-mediated apoptotic pathway for identifying key regulators. Comput. Biol. Medicine 41 (7) (2011)
Geoffrey Koh, Ariana Low, Daren Poh, Yujian Yao, Say Ng, Victor Wong, Vincent Vagenende, Kong-Peng Lam, Dong-Yup Lee
Integrative analysis workflow for the structural and functional classification of C-type lectins. BMC Bioinform. 12 (S-14) (2011)
Bevan Chung, Dong-Yup Lee
Flux-sum analysis: a metabolite-centric approach for understanding the metabolic network. BMC Syst. Biol. 3 (2009)
Dong-Yup Lee, Rajib Saha, Faraaz Noor Khan Yusufi, Wonjun Park, Iftekhar A. Karimi
Web-based applications for building, managing and analysing kinetic models of biological systems. Briefings Bioinform. 10 (1) (2009)
Tae-Sung Jung, Hock Chuan Yeo, Satty G. Reddy, Wan-Sup Cho, Dong-Yup Lee
model. Bioinform. 25 (21) (2009)
Dong-Yup Lee, Choamun Yun, Ayoun Cho, Bo Kyeng Hou, Sunwon Park, Sang Yup Lee
WebCell: a web-based environment for kinetic modeling and dynamic simulation of cellular networks. Bioinform. 22 (9) (2006)
Hongseok Yun, Dong-Yup Lee, Joonwoo Jeong, Seunghyun Lee, Sang Yup Lee
MFAML: a standard data structure for representing and exchanging metabolic flux models. Bioinform. 21 (15) (2005)
Bo Kyeng Hou, Jin Sik Kim, Ji Hoon Jun, Dong-Yup Lee, Yong Wook Kim, Sujin Chae, Mira Roh, Yong-Ho In, Sang Yup Lee
BioSilico: an integrated metabolic database system. Bioinform. 20 (17) (2004)
Dong-Yup Lee, Hongseok Yun, Sunwon Park, Sang Yup Lee
MetaFluxNet: the management of metabolic reaction information and quantitative metabolic flux analysis. Bioinform. 19 (16) (2003)