Claire Marks

Publication Activity (10 Years)

Years Active: 2016-2021
Publications (10 Years): 11

Top Topics

Prediction Accuracy

Subcellular Localization

Protein Homology

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Publications

Matthew I. J. Raybould, Claire Marks, Aleksandr Kovaltsuk, Alan P. Lewis, Jiye Shi, Charlotte M. Deane
Public Baseline and shared response structures support the theory of antibody repertoire functional commonality. PLoS Comput. Biol. 17 (3) (2021)
Sarah A. Robinson, Matthew I. J. Raybould, Constantin Schneider, Wing Ki Wong, Claire Marks, Charlotte M. Deane
Epitope profiling using computational structural modelling demonstrated on coronavirus-binding antibodies. PLoS Comput. Biol. 17 (12) (2021)
Claire Marks, Alissa M. Hummer, Mark Chin, Charlotte M. Deane
Humanization of antibodies using a machine learning approach on large-scale repertoire data. Bioinform. 37 (22) (2021)
Matthew I. J. Raybould, Aleksandr Kovaltsuk, Claire Marks, Charlotte M. Deane
CoV-AbDab: the coronavirus antibody database. Bioinform. 37 (5) (2021)
Aleksandr Kovaltsuk, Matthew I. J. Raybould, Wing Ki Wong, Claire Marks, Sebastian Kelm, James Snowden, Johannes Trück, Charlotte M. Deane
Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice. PLoS Comput. Biol. 16 (2) (2020)
Wing Ki Wong, Claire Marks, Jinwoo Leem, Alan P. Lewis, Jiye Shi, Charlotte M. Deane
TCRBuilder: multi-state T-cell receptor structure prediction. Bioinform. 36 (11) (2020)
Matthew I. J. Raybould, Claire Marks, Alan P. Lewis, Jiye Shi, Alexander Bujotzek, Bruck Taddese, Charlotte M. Deane
Thera-SAbDab: the Therapeutic Structural Antibody Database. Nucleic Acids Res. 48 (Database-Issue) (2020)
Claire Marks, Charlotte M. Deane
Increasing the accuracy of protein loop structure prediction with evolutionary constraints. Bioinform. 35 (15) (2019)
Claire Marks, Jiye Shi, Charlotte M. Deane
Predicting loop conformational ensembles. Bioinform. 34 (6) (2018)
Claire Marks, Jaroslaw Nowak, Stefan Klostermann, Guy Georges, James Dunbar, Jiye Shi, Sebastian Kelm, Charlotte M. Deane
Sphinx: merging knowledge-based and ab initio approaches to improve protein loop prediction. Bioinform. 33 (9) (2017)
James Dunbar, Konrad Krawczyk, Jinwoo Leem, Claire Marks, Jaroslaw Nowak, Cristian Regep, Guy Georges, Sebastian Kelm, Bojana Popovic, Charlotte M. Deane
SAbPred: a structure-based antibody prediction server. Nucleic Acids Res. 44 (Webserver-Issue) (2016)