Brooke L. Fridley

Publication Activity (10 Years)

Years Active: 2008-2022
Publications (10 Years): 7

Top Topics

Spectrum Analysis

Negative Binomial

Top Venues

Comput. Biol. Medicine

Comput. Methods Programs Biomed.

Publications

Christopher M. Wilson, Alex C. Soupir, Ram Thapa, Jordan H. Creed, Jonathan Nguyen, Carlos Moran Segura, Travis A. Gerke, Joellen M. Schildkraut, Lauren C. Peres, Brooke L. Fridley
Tumor immune cell clustering and its association with survival in African American women with ovarian cancer. PLoS Comput. Biol. 18 (3) (2022)
Jordan H. Creed, Christopher M. Wilson, Alex C. Soupir, Christelle M. Colin-Leitzinger, Gregory J. Kimmel, Oscar E. Ospina, Nicholas H. Chakiryan, Joseph Markowitz, Lauren C. Peres, Anna Coghill, Brooke L. Fridley
spatialTIME and iTIME: R package and Shiny application for visualization and analysis of immunofluorescence data. Bioinform. 37 (23) (2021)
Prabhakar Chalise, Yonghui Ni, Brooke L. Fridley
Network-based integrative clustering of multiple types of genomic data using non-negative matrix factorization. Comput. Biol. Medicine 118 (2020)
Qian Li, Kate Fisher, Wenjun Meng, Bin Fang, Eric A. Welsh, Eric B. Haura, John M. Koomen, Steven A. Eschrich, Brooke L. Fridley, Yian Ann Chen
GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis. Bioinform. 36 (1) (2020)
Qian Li, Janelle R. Noel-MacDonnell, Devin C. Koestler, Ellen L. Goode, Brooke L. Fridley
Subject level clustering using a negative binomial model for small transcriptomic studies. BMC Bioinform. 19 (1) (2018)
Richard Meier, Stefan Graw, Joseph Usset, Rama Raghavan, Junqiang Dai, Prabhakar Chalise, Shellie Ellis, Brooke L. Fridley, Devin C. Koestler
An ensemble-based Cox proportional hazards regression framework for predicting survival in metastatic castration-resistant prostate cancer (mCRPC) patients. F1000Research 5 (2016)
Prabhakar Chalise, Rama Raghavan, Brooke L. Fridley
InterSIM: Simulation tool for multiple integrative 'omic datasets'. Comput. Methods Programs Biomed. 128 (2016)
Nicholas B. Larson, Brooke L. Fridley
PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data. Bioinform. 29 (15) (2013)
Emily Rose Holzinger, Scott M. Dudek, Alex T. Frase, Brooke L. Fridley, Prabhakar Chalise, Marylyn D. Ritchie
Comparison of Methods for Meta-dimensional Data Analysis Using in Silico and Biological Data Sets. EvoBIO (2012)
Prabhakar Chalise, Brooke L. Fridley
Comparison of penalty functions for sparse canonical correlation analysis. Comput. Stat. Data Anal. 56 (2) (2012)
Brooke L. Fridley, Stephen T. Turner, Arlene B. Chapman, Andrei S. Rodin, Eric Boerwinkle, Kent R. Bailey
100K Human Mapping Array set. Comput. Stat. Data Anal. 52 (12) (2008)