Boyu Zhang

Publication Activity (10 Years)

Years Active: 2011-2020
Publications (10 Years): 5

Top Topics

Secondary Structure

Distributed Systems

Top Venues

Publications

Tao Gao, Yanfei Guo, Boyu Zhang, Pietro Cicotti, Yutong Lu, Pavan Balaji, Michela Taufer
Memory-Efficient and Skew-Tolerant MapReduce Over MPI for Supercomputing Systems. IEEE Trans. Parallel Distributed Syst. 31 (12) (2020)
Tao Gao, Yanfei Guo, Boyu Zhang, Pietro Cicotti, Yutong Lu, Pavan Balaji, Michela Taufer
On the Power of Combiner Optimizations in MapReduce Over MPI Workflows. ICPADS (2018)
Tao Gao, Yanfei Guo, Boyu Zhang, Pietro Cicotti, Yutong Lu, Pavan Balaji, Michela Taufer
Mimir: Memory-Efficient and Scalable MapReduce for Large Supercomputing Systems. IPDPS (2017)
Travis Johnston, Boyu Zhang, Adam Liwo, Silvia Crivelli, Michela Taufer
data analytics and indexing of protein trajectories. J. Comput. Chem. 38 (16) (2017)
Boyu Zhang, Trilce Estrada, Pietro Cicotti, Pavan Balaji, Michela Taufer
Enabling scalable and accurate clustering of distributed ligand geometries on supercomputers. Parallel Comput. 63 (2017)
Travis Johnston, Boyu Zhang, Adam Liwo, Silvia Crivelli, Michela Taufer
It-Situ Data Analysis of Protein Folding Trajectories. CoRR (2015)
Boyu Zhang, Trilce Estrada, Pietro Cicotti, Pavan Balaji, Michela Taufer
Accurate Scoring of Drug Conformations at the Extreme Scale. CCGRID (2015)
Boyu Zhang, Trilce Estrada, Pietro Cicotti, Michela Taufer
Enabling In-Situ Data Analysis for Large Protein-Folding Trajectory Datasets. IPDPS (2014)
Bahman Javadi, Boyu Zhang, Michela Taufer
Bandwidth Modeling in Large Distributed Systems for Big Data Applications. PDCAT (2014)
Boyu Zhang, Trilce Estrada, Pietro Cicotti, Michela Taufer
On Efficiently Capturing Scientific Properties in Distributed Big Data without Moving the Data: A Case Study in Distributed Structural Biology Using MapReduce. CSE (2013)
Daniel T. Yehdego, Boyu Zhang, Vikram Kumar Reddy Kodimala, Kyle L. Johnson, Michela Taufer, Ming-Ying Leung
Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce. IPDPS Workshops (2013)
Boyu Zhang, Daniel T. Yehdego, Kyle L. Johnson, Ming-Ying Leung, Michela Taufer
A modularized MapReduce framework to support RNA secondary structure prediction and analysis workflows. BIBM Workshops (2012)
Trilce Estrada, Boyu Zhang, Michela Taufer, Pietro Cicotti, Roger S. Armen
Reengineering High-throughput Molecular Datasets for Scalable Clustering Using MapReduce. HPCC-ICESS (2012)
Trilce Estrada, Boyu Zhang, Pietro Cicotti, Roger S. Armen, Michela Taufer
A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach. Comput. Biol. Medicine 42 (7) (2012)
Daniel T. Yehdego, Boyu Zhang, Michela Taufer, Vikram Kumar Reddy Kodimala, Rahulsimham Vegesna, Sameera Viswakula, Kyle L. Johnson, Ming-Ying Leung
Secondary structure predictions for long RNA sequences based on inversion excursions: preliminary results. BCB (2012)
Trilce Estrada, Boyu Zhang, Pietro Cicotti, Roger S. Armen, Michela Taufer
Poster: study of protein-ligand binding geometries using a scalable and accurate octree-based algorithm in mapReduce. SC Companion (2011)