Bernd W. Brandt

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 2

Top Topics

Disease Diagnosis

Biomedical Literature

Top Venues

BMC Syst. Biol.

Nucleic Acids Res.

Publications

Vincent Y. Pappalardo, Leyla Azarang, Egija Zaura, Bernd W. Brandt, Renée X. de Menezes
A new approach to describe the taxonomic structure of microbiome and its application to assess the relationship between microbial niches. BMC Bioinform. 25 (1) (2024)
Ali May, Bernd W. Brandt, Mohammed El-Kebir, Gunnar W. Klau, Egija Zaura, Wim Crielaard, Jaap Heringa, Sanne Abeln
metaModules identifies key functional subnetworks in microbiome-related disease. Bioinform. 32 (11) (2016)
Ali May, Sanne Abeln, Mark J. Buijs, Jaap Heringa, Wim Crielaard, Bernd W. Brandt
NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Ali May, Sanne Abeln, Wim Crielaard, Jaap Heringa, Bernd W. Brandt
Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations. Bioinform. 30 (11) (2014)
Mohammed El-Kebir, Bernd W. Brandt, Jaap Heringa, Gunnar W. Klau
A web server for protein-protein interaction network querying. BMC Syst. Biol. 8 (2014)
Vesna Pajic, Gordana Pavlovic-Lazetic, Milos V. Beljanski, Bernd W. Brandt, Milos Pajic
Towards a database for genotype-phenotype association research: mining data from encyclopaedia. Int. J. Data Min. Bioinform. 7 (2) (2013)
Bernd W. Brandt, Marc J. Bonder, Susan M. Huse, Egija Zaura
TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Marc J. Bonder, Sanne Abeln, Egija Zaura, Bernd W. Brandt
Comparing clustering and pre-processing in taxonomy analysis. Bioinform. 28 (22) (2012)
Bernd W. Brandt, Jaap Heringa
Protein analysis tools and services at IBIVU. J. Integr. Bioinform. 8 (2) (2011)
Bernd W. Brandt, K. Anton Feenstra, Jaap Heringa
Multi-Harmony: detecting functional specificity from sequence alignment. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Jorn Bruggeman, Jaap Heringa, Bernd W. Brandt
PhyloPars: estimation of missing parameter values using phylogeny. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Bernd W. Brandt, Jaap Heringa
webPRC: the Profile Comparer for alignment-based searching of public domain databases. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Bernd W. Brandt, Jaap Heringa, Jack A. M. Leunissen
SEQATOMS: a web tool for identifying missing regions in PDB in sequence context. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Alexander E. Ivliev, Peter A. C. 't Hoen, Michel P. Villerius, Johan T. den Dunnen, Bernd W. Brandt
Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)