Bercem Dutagaci

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 6

Top Topics

Machine Learning

Experimental Data

Molecular Dynamics Simulations

Top Venues

J. Chem. Inf. Model.

J. Comput. Chem.

J. Comput. Aided Mol. Des.

PLoS Comput. Biol.

Publications

Adan Gallardo, Bercem Dutagaci
Binding of small molecule inhibitors to RNA polymerase-Spt5 complex impacts RNA and DNA stability. J. Comput. Aided Mol. Des. 38 (1) (2024)
Bercem Dutagaci, Bingbing Duan, Chenxi Qiu, Craig D. Kaplan, Michael Feig
Characterization of RNA polymerase II trigger loop mutations using molecular dynamics simulations and machine learning. PLoS Comput. Biol. 19 (3) (2023)
Adan Gallardo, Brandon M. Bogart, Bercem Dutagaci
Protein-Nucleic Acid Interactions for RNA Polymerase II Elongation Factors by Molecular Dynamics Simulations. J. Chem. Inf. Model. 62 (12) (2022)
Stephanie A. Brocke, Alexandra Degen, Alexander D. MacKerell Jr., Bercem Dutagaci, Michael Feig
Prediction of Membrane Permeation of Drug Molecules by Combining an Implicit Membrane Model with Machine Learning. J. Chem. Inf. Model. 59 (3) (2019)
Bercem Dutagaci, Michael Feig
Determination of Hydrophobic Lengths of Membrane Proteins with the HDGB Implicit Membrane Model. J. Chem. Inf. Model. 57 (12) (2017)
Bercem Dutagaci, Maryam Sayadi, Michael Feig
Heterogeneous dielectric generalized Born model with a van der Waals term provides improved association energetics of membrane-embedded transmembrane helices. J. Comput. Chem. 38 (16) (2017)