Arun K. Ramani

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 4

Top Topics

High Throughput Sequencing

Top Venues

Briefings Bioinform.

Nucleic Acids Res.

Publications

Erik Christensen, Ping Luo, Andrei L. Turinsky, Mia Husic, Alaina Mahalanabis, Alaine Naidas, Juan Javier Díaz-Mejía, Michael Brudno, Trevor J. Pugh, Arun K. Ramani, Parisa Shooshtari
Evaluation of single-cell RNAseq labelling algorithms using cancer datasets. Briefings Bioinform. 24 (1) (2023)
Sean Upchurch, Emilio Palumbo, Jeremy Adams, David Bujold, Guillaume Bourque, Jared Nedzel, Keenan Graham, Meenakshi S. Kagda, Pedro Assis, Benjamin C. Hitz, Emilio Righi, Roderic Guigó, Barbara J. Wold, Alvis Brazma, Julia Burchard, Joe Capka, Michael Cherry, Laura Clarke, Brian Craft, Manolis Dermitzakis, Mark Diekhans, John Dursi, Michael Sean Fitzsimons, Zac Flaming, Romina Garrido, Alfred Gil, Paul Godden, Matt Green, Mitch Guttman, Brian Haas, Max Haeussler, Bo Li, Sten Linnarsson, Adam Lipski, David Liu, Simonne Longerich, David Lougheed, Jonathan Manning, John C. Marioni, Christopher Meyer, Stephen B. Montgomery, Alyssa Morrow, Alfonso Muñoz-Pomer Fuentes, Jared L. Nedzel, David Nguyen, Kevin Osborn, Francis Ouellette, Irene Papatheodorou, Dmitri D. Pervouchine, Arun K. Ramani, Jordi Rambla, Bashir Sadjad, David Steinberg, Jeremiah Talkar, Timothy Tickle, Kathy Tzeng, Saman Vaisipour, Sean Watford, Barbara Wold, Zhenyu Zhang, Jing Zhu
RNAget: an API to securely retrieve RNA quantifications. Bioinform. 39 (4) (2023)
Michael Apostolides, Yue Jiang, Mia Husic, Robert Siddaway, Cynthia Hawkins, Andrei L. Turinsky, Michael Brudno, Arun K. Ramani
MetaFusion: a high-confidence metacaller for filtering and prioritizing RNA-seq gene fusion candidates. Bioinform. 37 (19) (2021)
Suluxan Mohanraj, J. Javier Díaz-Mejía, Martin D. Pham, Hillary Elrick, Mia Husic, Shaikh Rashid, Ping Luo, Prabnur Bal, Kevin Lu, Samarth Patel, Alaina Mahalanabis, Alaine Naidas, Erik Christensen, Danielle Croucher, Laura M. Richards, Parisa Shooshtari, Michael Brudno, Arun K. Ramani, Trevor J. Pugh
CReSCENT: CanceR Single Cell ExpressioN Toolkit. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Razvan C. Bunescu, Raymond J. Mooney, Arun K. Ramani, Edward M. Marcotte
Integrating Co-occurrence Statistics with Information Extraction for Robust Retrieval of Protein Interactions from Medline. BioNLP@NAACL-HLT (2006)
Arun K. Ramani, Razvan C. Bunescu, Raymond J. Mooney, Edward M. Marcotte
Using Biomedical Literature Mining to Consolidate the Set of Known Human Protein-Protein Interactions. LBLODMBS@IDMB (2005)
Razvan C. Bunescu, Ruifang Ge, Rohit J. Kate, Edward M. Marcotte, Raymond J. Mooney, Arun K. Ramani, Yuk Wah Wong
Comparative experiments on learning information extractors for proteins and their interactions. Artif. Intell. Medicine 33 (2) (2005)