Andrew L. Ferguson

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 9

Top Topics

Dynamical Systems

Top Venues

J. Comput. Chem.

Multiscale Model. Simul.

PLoS Comput. Biol.

Publications

Ellis R. Crabtree, Juan M. Bello-Rivas, Andrew L. Ferguson, Ioannis G. Kevrekidis
GANs and Closures: Micro-Macro Consistency in Multiscale Modeling. Multiscale Model. Simul. 21 (3) (2023)
Michael S. Jones, Kirill Shmilovich, Andrew L. Ferguson
DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces. CoRR (2023)
Ellis R. Crabtree, Juan M. Bello-Rivas, Andrew L. Ferguson, Ioannis G. Kevrekidis
GANs and Closures: Micro-Macro Consistency in Multiscale Modeling. CoRR (2022)
Kirill Shmilovich, Rachael A. Mansbach, Hythem Sidky, Olivia E. Dunne, Sayak Subhra Panda, John D. Tovar, Andrew L. Ferguson
Discovery of Self-Assembling π-Conjugated Peptides by Active Learning-Directed Coarse-Grained Molecular Simulation. CoRR (2020)
Wei Chen, Hythem Sidky, Andrew L. Ferguson
Nonlinear Discovery of Slow Molecular Modes using Hierarchical Dynamics Encoders. CoRR (2019)
Wei Chen, Hythem Sidky, Andrew L. Ferguson
Capabilities and Limitations of Time-lagged Autoencoders for Slow Mode Discovery in Dynamical Systems. CoRR (2019)
Wei Chen, Andrew L. Ferguson
Molecular enhanced sampling with autoencoders: On-the-fly collective variable discovery and accelerated free energy landscape exploration. J. Comput. Chem. 39 (25) (2018)
Andrew L. Ferguson
BayesWHAM: A Bayesian approach for free energy estimation, reweighting, and uncertainty quantification in the weighted histogram analysis method. J. Comput. Chem. 38 (18) (2017)
Jingtian Hu, Andrew L. Ferguson
Global graph matching using diffusion maps. Intell. Data Anal. 20 (3) (2016)
Jaclyn K. Mann, John P. Barton, Andrew L. Ferguson, Saleha Omarjee, Bruce D. Walker, Arup Chakraborty, Thumbi Ndung'u
Testing. PLoS Comput. Biol. 10 (8) (2014)