Andrew J. Bordner

Publication Activity (10 Years)

Years Active: 2003-2012
Publications (10 Years): 0

Top Topics

Binding Peptides

Building Blocks

Top Venues

J. Comput. Aided Mol. Des.

Publications

Jerez A. Te, Maoqing Dong, Laurence J. Miller, Andrew J. Bordner
Predicting the effects of amino acid replacements in peptide hormones on their binding affinities for class B GPCRs and application to the design of secretin receptor antagonists. J. Comput. Aided Mol. Des. 26 (7) (2012)
Andrew J. Bordner, Barry Zorman, Ruben Abagyan
Efficient molecular mechanics simulations of the folding, orientation, and assembly of peptides in lipid bilayers using an implicit atomic solvation model. J. Comput. Aided Mol. Des. 25 (10) (2011)
Andrew J. Bordner
Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design. BMC Bioinform. 11 (2010)
Andrew J. Bordner, Hans D. Mittelmann
MultiRTA: A simple yet reliable method for predicting peptide binding affinities for multiple class II MHC allotypes. BMC Bioinform. 11 (2010)
Andrew J. Bordner, Hans D. Mittelmann
Prediction of the binding affinities of peptides to class II MHC using a regularized thermodynamic model. BMC Bioinform. 11 (2010)
Xiuping Tao, Andrew J. Bordner, Thomas C. Schulthess, Andrey A. Gorin
Kernelling Method for Identifying Near-Native Protein Decoy Structures. BIOCOMP (2010)
Andrew J. Bordner
Predicting protein-protein binding sites in membrane proteins. BMC Bioinform. 10 (2009)
Andrew J. Bordner, Andrey A. Gorin
Comprehensive inventory of protein complexes in the Protein Data Bank from consistent classification of interfaces. BMC Bioinform. 9 (2008)
Andrew J. Bordner
Predicting small ligand binding sites in proteins using backbone structure. Bioinform. 24 (24) (2008)
Andrew J. Bordner, Ruben Abagyan
REVCOM: a robust Bayesian method for evolutionary rate estimation. Bioinform. 21 (10) (2005)
Andrew J. Bordner, G. A. Huber
Boundary element solution of the linear Poisson-Boltzmann equation and a multipole method for the rapid calculation of forces on macromolecules in solution. J. Comput. Chem. 24 (3) (2003)