Andrei L. Lomize

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 7

Top Topics

Protein Folding

Modeling Framework

Top Venues

J. Chem. Inf. Model.

Nucleic Acids Res.

Publications

Irina D. Pogozheva, Stanislav Cherepanov, Sang-Jun Park, Malini Raghavan, Wonpil Im, Andrei L. Lomize
Structural Modeling of Cytokine-Receptor-JAK2 Signaling Complexes Using AlphaFold Multimer. J. Chem. Inf. Model. 63 (18) (2023)
Irina D. Pogozheva, Grant A. Armstrong, Lingyang Kong, Timothy J. Hartnagel, Carly A. Carpino, Stephen E. Gee, Danielle M. Picarello, Amanda S. Rubin, Jumin Lee, Soohyung Park, Andrei L. Lomize, Wonpil Im
Comparative Molecular Dynamics Simulation Studies of Realistic Eukaryotic, Prokaryotic, and Archaeal Membranes. J. Chem. Inf. Model. 62 (4) (2022)
Andrei L. Lomize, Kevin Schnitzer, Spencer C. Todd, Irina D. Pogozheva
Thermodynamics-Based Molecular Modeling of α-Helices in Membranes and Micelles. J. Chem. Inf. Model. 61 (6) (2021)
Andrei L. Lomize, Jacob M. Hage, Kevin Schnitzer, Konstantin Golobokov, Mitchell B. Lafaive, Alexander C. Forsyth, Irina D. Pogozheva
PerMM: A Web Tool and Database for Analysis of Passive Membrane Permeability and Translocation Pathways of Bioactive Molecules. J. Chem. Inf. Model. 59 (7) (2019)
Andrei L. Lomize, Irina D. Pogozheva
Physics-Based Method for Modeling Passive Membrane Permeability and Translocation Pathways of Bioactive Molecules. J. Chem. Inf. Model. 59 (7) (2019)
Andrei L. Lomize, Jacob M. Hage, Irina D. Pogozheva
Membranome 2.0: database for proteome-wide profiling of bitopic proteins and their dimers. Bioinform. 34 (6) (2018)
Andrei L. Lomize, Mikhail A. Lomize, Shean R. Krolicki, Irina D. Pogozheva
Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Nucleic Acids Res. 45 (Database-Issue) (2017)
Mikhail A. Lomize, Irina D. Pogozheva, Hyeon Joo, Henry I. Mosberg, Andrei L. Lomize
OPM database and PPM web server: resources for positioning of proteins in membranes. Nucleic Acids Res. 40 (Database-Issue) (2012)
Andrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg
Anisotropic Solvent Model of the Lipid Bilayer. 1. Parameterization of Long-Range Electrostatics and First Solvation Shell Effects. J. Chem. Inf. Model. 51 (4) (2011)
Andrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg
Anisotropic Solvent Model of the Lipid Bilayer. 2. Energetics of Insertion of Small Molecules, Peptides, and Proteins in Membranes. J. Chem. Inf. Model. 51 (4) (2011)
Mikhail A. Lomize, Andrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg
OPM: Orientations of Proteins in Membranes database. Bioinform. 22 (5) (2006)
Andrei L. Lomize, Irina D. Pogozheva, Henry I. Mosberg
Structural organization of G-protein-coupled receptors. J. Comput. Aided Mol. Des. 13 (4) (1999)