Alex M. Clark

Publication Activity (10 Years)

Years Active: 2006-2019
Publications (10 Years): 5

Top Topics

Semantically Annotated

Bayesian Models

Top Venues

J. Chem. Inf. Model.

J. Cheminformatics

J. Comput. Aided Mol. Des.

Publications

Alex M. Clark, Leah McEwen, Peter Gedeck, Barry A. Bunin
Capturing mixture composition: an open machine-readable format for representing mixed substances. J. Cheminformatics 11 (1) (2019)
Sean Ekins, Alexander L. Perryman, Alex M. Clark, Robert C. Reynolds, Joel S. Freundlich
Infection (2014-2015). J. Chem. Inf. Model. 56 (7) (2016)
Alex M. Clark, Krishna Dole, Sean Ekins
Open Source Bayesian Models. 3. Composite Models for Prediction of Binned Responses. J. Chem. Inf. Model. 56 (2) (2016)
Alex M. Clark, Nadia K. Litterman, Janice E. Kranz, Peter Gund, Kellan Gregory, Barry A. Bunin
BioAssay templates for the semantic web. PeerJ Prepr. 4 (2016)
Alex M. Clark, Nadia K. Litterman, Janice E. Kranz, Peter Gund, Kellan Gregory, Barry A. Bunin
BioAssay templates for the semantic web. PeerJ Comput. Sci. 2 (2016)
Sean Ekins, Joel S. Freundlich, Alex M. Clark, Manu Anantpadma, Robert A. Davey, Peter B. Madrid
. F1000Research 4 (2015)
Alex M. Clark, Antony J. Williams, Sean Ekins
Machines first, humans second: on the importance of algorithmic interpretation of open chemistry data. J. Cheminformatics 7 (2015)
Alex M. Clark, Krishna Dole, Anna Coulon-Spektor, Andrew M. McNutt, George Grass, Joel S. Freundlich, Robert C. Reynolds, Sean Ekins
Open Source Bayesian Models. 1. Application to ADME/Tox and Drug Discovery Datasets. J. Chem. Inf. Model. 55 (6) (2015)
Alex M. Clark, Sean Ekins
Open Source Bayesian Models. 2. Mining a "Big Dataset" To Create and Validate Models with ChEMBL. J. Chem. Inf. Model. 55 (6) (2015)
Sean Ekins, Richard Pottorf, Robert C. Reynolds, Antony J. Williams, Alex M. Clark, Joel S. Freundlich
. J. Chem. Inf. Model. 54 (4) (2014)
Sean Ekins, Alex M. Clark, S. Joshua Swamidass, Nadia K. Litterman, Antony J. Williams
Bigger data, collaborative tools and the future of predictive drug discovery. J. Comput. Aided Mol. Des. 28 (10) (2014)
Alex M. Clark, Malabika Sarker, Sean Ekins
New target prediction and visualization tools incorporating open source molecular fingerprints for TB Mobile 2.0. J. Cheminformatics 6 (1) (2014)
Sean Ekins, Alex M. Clark, Malabika Sarker
TB mobile: a mobile app for anti-tuberculosis molecules with known targets. J. Cheminformatics 5 (2013)
Alex M. Clark
Accurate Specification of Molecular Structures: The Case for Zero-Order Bonds and Explicit Hydrogen Counting. J. Chem. Inf. Model. 51 (12) (2011)
Alex M. Clark
2D Depiction of Fragment Hierarchies. J. Chem. Inf. Model. 50 (1) (2010)
Alex M. Clark
Basic primitives for molecular diagram sketching. J. Cheminformatics 2 (2010)
Alex M. Clark, Paul Labute
2D Depiction of Protein-Ligand Complexes. J. Chem. Inf. Model. 47 (5) (2007)
Alex M. Clark, Paul Labute, Martin Santavy
2D Structure Depiction. J. Chem. Inf. Model. 46 (3) (2006)