Adam T. Zemla

Publication Activity (10 Years)

Years Active: 1994-2023
Publications (10 Years): 5

Top Topics

Mass Spectrometry

Virtual Screening

Physicochemical Properties

Top Venues

J. Chem. Inf. Model.

Publications

Garrett A. Stevenson, Dan Kirshner, Brian J. Bennion, Yue Yang, Xiaohua Zhang, Adam T. Zemla, Marisa W. Torres, Aidan Epstein, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Sergio Ernesto Wong, Jonathan E. Allen, Felice C. Lightstone
Clustering Protein Binding Pockets and Identifying Potential Drug Interactions: A Novel Ligand-Based Featurization Method. J. Chem. Inf. Model. 63 (21) (2023)
Garrett A. Stevenson, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Brian J. Bennion, Monica Borucki, Feliza Bourguet, Aidan Epstein, Magdalena Franco, Brooke Harmon, Stewart He, Max P. Katz, Daniel A. Kirshner, Victoria Lao, Edmond Y. Lau, Jacky Lo, Kevin McLoughlin, Richard Mosesso, Deepa K. Murugesh, Oscar A. Negrete, Edwin A. Saada, Brent Segelke, Maxwell Stefan, Marisa W. Torres, Dina Weilhammer, Sergio E. Wong, Yue Yang, Adam T. Zemla, Xiaohua Zhang, Fangqiang Zhu, Felice C. Lightstone, Jonathan E. Allen
High-throughput virtual screening of small molecule inhibitors for SARS-CoV-2 protein targets with deep fusion models. SC (2021)
Garrett A. Stevenson, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Brian J. Bennion, Monica Borucki, Feliza Bourguet, Aidan Epstein, Magdalena Franco, Brooke Harmon, Stewart He, Max P. Katz, Daniel A. Kirshner, Victoria Lao, Edmond Y. Lau, Jacky Lo, Kevin McLoughlin, Richard Mosesso, Deepa K. Murugesh, Oscar A. Negrete, Edwin A. Saada, Brent Segelke, Maxwell Stefan, Marisa W. Torres, Dina Weilhammer, Sergio E. Wong, Yue Yang, Adam T. Zemla, Xiaohua Zhang, Fangqiang Zhu, Felice C. Lightstone, Jonathan E. Allen
High-Throughput Virtual Screening of Small Molecule Inhibitors for SARS-CoV-2 Protein Targets with Deep Fusion Models. CoRR (2021)
Derek Jones, Hyojin Kim, Xiaohua Zhang, Adam T. Zemla, Garrett Stevenson, W. F. Drew Bennett, Daniel A. Kirshner, Sergio E. Wong, Felice C. Lightstone, Jonathan E. Allen
Improved Protein-Ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference. J. Chem. Inf. Model. 61 (4) (2021)
Derek Jones, Hyojin Kim, Xiaohua Zhang, Adam T. Zemla, Garrett Stevenson, William D. Bennett, Daniel A. Kirshner, Sergio E. Wong, Felice C. Lightstone, Jonathan E. Allen
Improved Protein-ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference. CoRR (2020)
Adam T. Zemla, Dorothy M. Lang, Tanya Kostova, Raul Andino, Carol L. Ecale Zhou
StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase. BMC Bioinform. 12 (2011)
Alexis P. Yelton, Brian C. Thomas, Sheri L. Simmons, Paul Wilmes, Adam T. Zemla, Michael P. Thelen, Nicholas Justice, Jillian F. Banfield
A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes. PLoS Comput. Biol. 7 (10) (2011)
Anu Chakicherla, Carol L. Ecale Zhou, Martha Ligon Dang, Virginia Rodriguez, J. Norman Hansen, Adam T. Zemla
Phosphorylation Studies. PLoS Comput. Biol. 5 (6) (2009)
Carol L. Ecale Zhou, Jason Smith, Marisa Lam, Adam T. Zemla, Matthew D. Dyer, Tom Slezak
MvirDB - a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. Nucleic Acids Res. 35 (Database-Issue) (2007)
Carol L. Ecale Zhou, Marisa Lam, Jason Smith, Adam T. Zemla, Matthew D. Dyer, Thomas A. Kuczmarski, Elizabeth A. Vitalis, Thomas R. Slezak
MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization. BMC Bioinform. 7 (2006)
Carol L. Ecale Zhou, Adam T. Zemla, Diana C. Roe, Malin M. Young, Marisa Lam, Joseph S. Schoeniger, Rod Balhorn
Computational approaches for identification of conserved/unique binding pockets in the A chain of ricin. Bioinform. 21 (14) (2005)
Adam T. Zemla, Carol L. Ecale Zhou, Tom Slezak, Tom Kuczmarski, D. Rama, Clinton Torres, D. Sawicka, Daniel Barsky
AS2TS system for protein structure modeling and analysis. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Adam T. Zemla
LGA: a method for finding 3D similarities in protein structures. Nucleic Acids Res. 31 (13) (2003)
Tom Slezak, Tom Kuczmarski, Linda L. Ott, Clinton Torres, Dan Medeiros, Jason Smith, Brian Truitt, Nisha Mulakken, Marisa Lam, Elizabeth A. Vitalis, Adam T. Zemla, Carol L. Ecale Zhou, Shea N. Gardner
Comparative Genomics Tools Applied to Bioterrorism Defence. Briefings Bioinform. 4 (2) (2003)
J. Patrick Fitch, Shea N. Gardner, Thomas A. Kuczmarski, Stefan Kurtz, Rich Myers, Linda L. Ott, Thomas R. Slezak, Elizabeth A. Vitalis, Adam T. Zemla, Paula M. McCready
Rapid development of nucleic acid diagnostics. Proc. IEEE 90 (11) (2002)
Susana Cristobal, Adam T. Zemla, Daniel Fischer, Leszek Rychlewski, Arne Elofsson
A study of quality measures for protein threading models. BMC Bioinform. 2 (2001)
Jack J. Dongarra, Jeremy Du Croz, Sven Hammarling, Jerzy Wasniewski, Adam T. Zemla
Lapack for Fortran90 Compiler. HPCN Europe (1996)
Jack J. Dongarra, Jeremy Du Croz, Sven Hammarling, Jerzy Wasniewski, Adam T. Zemla
A Proposal for a Fortran 90 Interface for LAPACK. PARA (1995)
Adam T. Zemla
Wavelet Transforms Computing on PVM. PARA (1994)