Aarya Venkat

Publication Activity (10 Years)

Years Active: 2020-2023
Publications (10 Years): 5

Top Topics

Protein Structure Prediction

Computational Biology

Security Protection

Embedding Space

Top Venues

Briefings Bioinform.

PLoS Comput. Biol.

Publications

Wayland Yeung, Zhongliang Zhou, Liju Mathew, Nathan Gravel, Rahil Taujale, Brady O'boyle, Mariah Salcedo, Aarya Venkat, William Lanzilotta, Sheng Li, Natarajan Kannan
Tree visualizations of protein sequence embedding space enable improved functional clustering of diverse protein superfamilies. Briefings Bioinform. 24 (1) (2023)
Zhongliang Zhou, Mengxuan Hu, Mariah Salcedo, Nathan Gravel, Wayland Yeung, Aarya Venkat, Dongliang Guo, Jielu Zhang, Natarajan Kannan, Sheng Li
XAI meets Biology: A Comprehensive Review of Explainable AI in Bioinformatics Applications. CoRR (2023)
Maya L. Gosztyla, Lydia Kwong, Naomi A. Murray, Claire E. Williams, Nicholas Behnke, Porsia Curry, Kevin D. Corbett, Karen N. DSouza, Julia Gala de Pablo, Joanina Gicobi, Monica Javidnia, Navina Lotay, Sidney Madison Prescott, James P. Quinn, Zeena M. G. Rivera, Markia A. Smith, Karen T. Y. Tang, Aarya Venkat, Megan A. Yamoah
Responses to 10 common criticisms of anti-racism action in STEMM. PLoS Comput. Biol. 17 (7) (2021)
Liang-Chin Huang, Rahil Taujale, Nathan Gravel, Aarya Venkat, Wayland Yeung, Dominic P. Byrne, Patrick A. Eyers, Natarajan Kannan
KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases. BMC Bioinform. 22 (1) (2021)
Liang-Chin Huang, Wayland Yeung, Ye Wang, Huimin Cheng, Aarya Venkat, Sheng Li, Ping Ma, Khaled Rasheed, Natarajan Kannan
Quantitative Structure-Mutation-Activity Relationship Tests (QSMART) model for protein kinase inhibitor response prediction. BMC Bioinform. 21 (1) (2020)